View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11142_high_55 (Length: 250)

Name: NF11142_high_55
Description: NF11142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11142_high_55
NF11142_high_55
[»] chr8 (13 HSPs)
chr8 (13-231)||(2711219-2711437)
chr8 (11-224)||(3170201-3170414)
chr8 (13-221)||(2989309-2989517)
chr8 (11-223)||(2980199-2980411)
chr8 (11-224)||(3142097-3142310)
chr8 (11-231)||(3002284-3002504)
chr8 (11-225)||(9851031-9851245)
chr8 (11-221)||(2916062-2916272)
chr8 (45-130)||(3173800-3173885)
chr8 (60-131)||(2911153-2911224)
chr8 (164-221)||(3282582-3282639)
chr8 (164-221)||(13791255-13791312)
chr8 (16-121)||(13791349-13791454)
[»] chr6 (1 HSPs)
chr6 (13-221)||(18355709-18355917)
[»] chr1 (1 HSPs)
chr1 (11-231)||(10755591-10755811)
[»] scaffold0065 (2 HSPs)
scaffold0065 (12-224)||(45425-45637)
scaffold0065 (11-232)||(50587-50808)
[»] chr7 (1 HSPs)
chr7 (13-224)||(3919085-3919296)
[»] chr2 (1 HSPs)
chr2 (51-121)||(32408650-32408720)


Alignment Details
Target: chr8 (Bit Score: 203; Significance: 1e-111; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 13 - 231
Target Start/End: Original strand, 2711219 - 2711437
Alignment:
Q  13 gagacacatacccacaaactcttttcaaaccaattttgcacttcagcatcattgtataccaattgagcaagagctgtctttcccaaaccaccaataccaa 112  Q
    |||||||||||||||| ||||||||||||| |||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2711219 gagacacatacccacatactcttttcaaacaaattttgcacttgatcatcattgtataccaattgagcaagagctgtctttcccaaaccaccaataccaa 2711318  T
Q  113 caatagcaaccaaggagacattctgattttcatgtgattgcctcaacaagcttataatcttctttttatcatcttctcttccaataatctctgattctaa 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2711319 caatagcaaccaaggagacattctgattttcatgtgattgcctcaacaagcttataatcttctttttatcatcttctcttccaataatctctgattctaa 2711418  T
Q  213 cacaaaagaactactttcc 231  Q
    |||||||||||||||||||    
T  2711419 cacaaaagaactactttcc 2711437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 11 - 224
Target Start/End: Original strand, 3170201 - 3170414
Alignment:
Q  11 cagagacacatacccacaaactcttttcaaaccaattttgcacttcagcatcattgtataccaattgagcaagagctgtctttcccaaaccaccaatacc 110  Q
    ||||||||||||||||||  |||||||||||  | |||   |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3170201 cagagacacatacccacatcctcttttcaaaagactttgttacttgagcatcattgtataccaattgagcaagagctgtctttcccaaaccaccaatacc 3170300  T
Q  111 aacaatagcaaccaaggagacattctgattttcatgtgattgcctcaacaagcttataatcttctttttatcatcttctcttccaataatctctgattct 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||    
T  3170301 aacaatagcaaccaaggagacattctgattttcatgtgattgcctcaacaagcttatgatcttctttttatcatcttctcttccaatgatctctgattct 3170400  T
Q  211 aacacaaaagaact 224  Q
    ||||||||||||||    
T  3170401 aacacaaaagaact 3170414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 13 - 221
Target Start/End: Complemental strand, 2989517 - 2989309
Alignment:
Q  13 gagacacatacccacaaactcttttcaaaccaattttgcacttcagcatcattgtataccaattgagcaagagctgtctttcccaaaccaccaataccaa 112  Q
    |||||||||||||||| |  |||||||||| |||||| ||||||| |||| |||||||||| ||||||||||||||||||||||||||||||||||||||    
T  2989517 gagacacatacccacatatgcttttcaaacaaatttttcacttcaccatctttgtataccagttgagcaagagctgtctttcccaaaccaccaataccaa 2989418  T
Q  113 caatagcaaccaaggagacattctgattttcatgtgattgcctcaacaagcttataatcttctttttatcatcttctcttccaataatctctgattctaa 212  Q
    ||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| | |||| ||| |||||||||||||| ||||| ||||||||    
T  2989417 caatagcaaccaatgagacattctgatgttcatgtgattgcctcaacaagcttataatcgtgttttgatcttcttctcttccaatgatctcagattctaa 2989318  T
Q  213 cacaaaaga 221  Q
    |||| ||||    
T  2989317 cacataaga 2989309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 11 - 223
Target Start/End: Complemental strand, 2980411 - 2980199
Alignment:
Q  11 cagagacacatacccacaaactcttttcaaaccaattttgcacttcagcatcattgtataccaattgagcaagagctgtctttcccaaaccaccaatacc 110  Q
    ||||||||||||||||||  |||||||||||| |||| ||||||||  |||| ||||||||||||||||||||||| |||||||||||||||||||||||    
T  2980411 cagagacacatacccacattctcttttcaaacaaattctgcacttcttcatcgttgtataccaattgagcaagagccgtctttcccaaaccaccaatacc 2980312  T
Q  111 aacaatagcaaccaaggagacattctgattttcatgtgattgcctcaacaagcttataatcttctttttatcatcttctcttccaataatctctgattct 210  Q
    ||||||||||||||  || || |  |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || | |||||||    
T  2980311 aacaatagcaaccacagaaacttgttgattttcatgtgattgcctcaacaagcttataatcttgtttttatcatcttctcttccaatgatatttgattct 2980212  T
Q  211 aacacaaaagaac 223  Q
    |||||| ||||||    
T  2980211 aacacataagaac 2980199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 11 - 224
Target Start/End: Original strand, 3142097 - 3142310
Alignment:
Q  11 cagagacacatacccacaaactcttttcaaaccaattttgcacttcagcatcattgtataccaattgagcaagagctgtctttcccaaaccaccaatacc 110  Q
    |||||||||| ||||||| || |||||||||  |||||   |||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| ||    
T  3142097 cagagacacaaacccacatacacttttcaaaataatttgttacttcaccatcattgtataccaattgagaaagagctgtctttcccaaaccaccaatccc 3142196  T
Q  111 aacaatagcaaccaaggagacattctgattttcatgtgattgcctcaacaagcttataatcttctttttatcatcttctcttccaataatctctgattct 210  Q
    ||||||||||||||  ||||||   ||||||||||||||||||||||||| ||||| ||| |  ||||||||||| ||||||||||| || ||||| |||    
T  3142197 aacaatagcaaccacagagacacgttgattttcatgtgattgcctcaacatgcttacaatgtcatttttatcatcatctcttccaatgatatctgactct 3142296  T
Q  211 aacacaaaagaact 224  Q
    ||||||||||||||    
T  3142297 aacacaaaagaact 3142310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 11 - 231
Target Start/End: Complemental strand, 3002504 - 3002284
Alignment:
Q  11 cagagacacatacccacaaactcttttcaaaccaattttgcacttcagcatcattgtataccaattgagcaagagctgtctttcccaaaccaccaatacc 110  Q
    |||||||||||||||||| |||  |||||||| |||||||||||||  ||||||| |||||||| |||||||||| ||||||||| ||||||||||| ||    
T  3002504 cagagacacatacccacatacttatttcaaacaaattttgcacttctccatcattatataccaactgagcaagagttgtctttcctaaaccaccaatccc 3002405  T
Q  111 aacaatagcaaccaaggagacattctgattttcatgtgattgcctcaacaagcttataatcttctttttatcatcttctcttccaataatctctgattct 210  Q
    ||||||||||| |||||||||||| || ||| |||||| ||| ||||| | |  |||||||| ||||||||| |||||||||||||| || || ||||||    
T  3002404 aacaatagcaatcaaggagacattttggtttccatgtggttgtctcaaaaggtgtataatctcctttttatcgtcttctcttccaatgatatccgattct 3002305  T
Q  211 aacacaaaagaactactttcc 231  Q
    ||||| ||||||||| |||||    
T  3002304 aacaccaaagaactagtttcc 3002284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 11 - 225
Target Start/End: Original strand, 9851031 - 9851245
Alignment:
Q  11 cagagacacatacccacaaactcttttcaaaccaattttgcacttcagcatcattgtataccaattgagcaagagctgtctttcccaaaccaccaatacc 110  Q
    ||||||||||||||||||  |||||||||||| |||||| ||||||    |||   || | || ||||||||||| ||||||||||||||||||||  ||    
T  9851031 cagagacacatacccacatcctcttttcaaacaaatttttcacttccatgtcacaataaatcatttgagcaagagttgtctttcccaaaccaccaaatcc 9851130  T
Q  111 aacaatagcaaccaaggagacattctgattttcatgtgattgcctcaacaagcttataatcttctttttatcatcttctcttccaataatctctgattct 210  Q
    ||||| ||||| ||| |||||||| ||||||||||||| ||| ||||||||||||||||||||| |||||||||||||||||||||| || || |||||     
T  9851131 aacaacagcaatcaaagagacattttgattttcatgtggttgtctcaacaagcttataatcttcattttatcatcttctcttccaatgatatccgattcc 9851230  T
Q  211 aacacaaaagaacta 225  Q
    |||||||||||||||    
T  9851231 aacacaaaagaacta 9851245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 11 - 221
Target Start/End: Original strand, 2916062 - 2916272
Alignment:
Q  11 cagagacacatacccacaaactcttttcaaaccaattttgcacttcagcatcattgtataccaattgagcaagagctgtctttcccaaaccaccaatacc 110  Q
    |||| ||||||||||| |   |||||||||||   |||||||||||  ||||||| ||||||| |||||||||||||||||| || ||||| ||||||||    
T  2916062 cagacacacatacccatatcttcttttcaaactttttttgcacttccccatcattatataccagttgagcaagagctgtcttacctaaaccgccaatacc 2916161  T
Q  111 aacaatagcaaccaaggagacattctgattttcatgtgattgcctcaacaagcttataatcttctttttatcatcttctcttccaataatctctgattct 210  Q
    |||||| |||| |||||||||||| || |||  ||||| ||||||||| ||  ||| |||||  ||||||| ||||||||| ||||| || |||||||||    
T  2916162 aacaatggcaatcaaggagacattgtggtttctatgtggttgcctcaataaatttacaatctcttttttattatcttctctaccaatgatatctgattct 2916261  T
Q  211 aacacaaaaga 221  Q
    || ||||||||    
T  2916262 aatacaaaaga 2916272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 45 - 130
Target Start/End: Original strand, 3173800 - 3173885
Alignment:
Q  45 attttgcacttcagcatcattgtataccaattgagcaagagctgtctttcccaaaccaccaataccaacaatagcaaccaaggaga 130  Q
    ||||||||||||  |||||||||||||||||||||||||||||||||| |||||||||||||| ||||| || ||||||| |||||    
T  3173800 attttgcacttctccatcattgtataccaattgagcaagagctgtcttccccaaaccaccaattccaactattgcaaccagggaga 3173885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 60 - 131
Target Start/End: Original strand, 2911153 - 2911224
Alignment:
Q  60 atcattgtataccaattgagcaagagctgtctttcccaaaccaccaataccaacaatagcaaccaaggagac 131  Q
    ||||||||||||||| ||||||||||||||||| || ||||||||||||||||||||||| | |||||||||    
T  2911153 atcattgtataccaactgagcaagagctgtcttgcctaaaccaccaataccaacaatagctatcaaggagac 2911224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 164 - 221
Target Start/End: Original strand, 3282582 - 3282639
Alignment:
Q  164 ttataatcttctttttatcatcttctcttccaataatctctgattctaacacaaaaga 221  Q
    ||||||||| |||||||||||||||||||||| | || | ||||||||||| ||||||    
T  3282582 ttataatctcctttttatcatcttctcttccattgatatttgattctaacaaaaaaga 3282639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 164 - 221
Target Start/End: Complemental strand, 13791312 - 13791255
Alignment:
Q  164 ttataatcttctttttatcatcttctcttccaataatctctgattctaacacaaaaga 221  Q
    ||||||||| ||||||||||||||||||||| || || | ||||||||||| ||||||    
T  13791312 ttataatctcctttttatcatcttctcttcccatgatgtttgattctaacaaaaaaga 13791255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 121
Target Start/End: Complemental strand, 13791454 - 13791349
Alignment:
Q  16 acacatacccacaaactcttttcaaaccaattttgcacttcagcatcattgtataccaattgagcaagagctgtctttcccaaaccaccaataccaacaa 115  Q
    |||||||||||||   ||||||||||    |||||||||||  ||||||| ||||| ||| ||||||||| |||||| || | ||| |||||||| ||||    
T  13791454 acacatacccacattttcttttcaaaatgcttttgcacttccacatcattatatacgaatcgagcaagagttgtcttgccaatacctccaatacctacaa 13791355  T
Q  116 tagcaa 121  Q
    || |||    
T  13791354 taacaa 13791349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 149; Significance: 8e-79; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 13 - 221
Target Start/End: Complemental strand, 18355917 - 18355709
Alignment:
Q  13 gagacacatacccacaaactcttttcaaaccaattttgcacttcagcatcattgtataccaattgagcaagagctgtctttcccaaaccaccaataccaa 112  Q
    |||||||||||||||| |  |||||||||| |||||| ||||||| |||| |||||||||| ||||||||||||||||||||||||||||||||||||||    
T  18355917 gagacacatacccacatatgcttttcaaacaaatttttcacttcaccatctttgtataccagttgagcaagagctgtctttcccaaaccaccaataccaa 18355818  T
Q  113 caatagcaaccaaggagacattctgattttcatgtgattgcctcaacaagcttataatcttctttttatcatcttctcttccaataatctctgattctaa 212  Q
    ||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| ||||| ||||||||    
T  18355817 caatagcaaccaatgagacattctgatgttcatgtgattgcctcaacaagcttataatcttgtttttatcttcttctcttccaatgatctcagattctaa 18355718  T
Q  213 cacaaaaga 221  Q
    |||| ||||    
T  18355717 cacataaga 18355709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 145; Significance: 2e-76; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 11 - 231
Target Start/End: Original strand, 10755591 - 10755811
Alignment:
Q  11 cagagacacatacccacaaactcttttcaaaccaattttgcacttcagcatcattgtataccaattgagcaagagctgtctttcccaaaccaccaatacc 110  Q
    |||||||||||||||||| |||||| |||||| ||| |||||||||   ||| ||||||||||||||||||||||| ||||| || ||||||||||||||    
T  10755591 cagagacacatacccacatactcttctcaaacaaatcttgcacttctctatcgttgtataccaattgagcaagagccgtcttccctaaaccaccaatacc 10755690  T
Q  111 aacaatagcaaccaaggagacattctgattttcatgtgattgcctcaacaagcttataatcttctttttatcatcttctcttccaataatctctgattct 210  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| ||||||||||||| |||||||||||| || | |||||||    
T  10755691 aacaatagcaaccaaggagacattctgattttcatgtgattgcatcaacaaacttataattttctttttatcatattctcttccaatgatatttgattct 10755790  T
Q  211 aacacaaaagaactactttcc 231  Q
    ||||||||||||||| |||||    
T  10755791 aacacaaaagaactagtttcc 10755811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0065 (Bit Score: 137; Significance: 1e-71; HSPs: 2)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 12 - 224
Target Start/End: Complemental strand, 45637 - 45425
Alignment:
Q  12 agagacacatacccacaaactcttttcaaaccaattttgcacttcagcatcattgtataccaattgagcaagagctgtctttcccaaaccaccaatacca 111  Q
    |||||||||||||||||  |||||||||||  | |||   |||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| ||     
T  45637 agagacacatacccacatcctcttttcaaaagactttgttacttcaccatcattgtataccaattgagcaagagctgtctttcccaaaccgccaatccct 45538  T
Q  112 acaatagcaaccaaggagacattctgattttcatgtgattgcctcaacaagcttataatcttctttttatcatcttctcttccaataatctctgattcta 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |||||||||||||||| || || |||||||||     
T  45537 acaatagcaaccaaggagacattctgattttcatgtgattgcctcaacaagcttatgatcttatttctatcatcttctcttccgatgatatctgattctg 45438  T
Q  212 acacaaaagaact 224  Q
    |||||||||||||    
T  45437 acacaaaagaact 45425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0065; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 11 - 232
Target Start/End: Complemental strand, 50808 - 50587
Alignment:
Q  11 cagagacacatacccacaaactcttttcaaaccaattttgcacttcagcatcattgtataccaattgagcaagagctgtctttcccaaaccaccaatacc 110  Q
    |||||||||| ||||||| ||||||| |||| |  ||||  |||||| | |||||||| || ||||||||||||| ||||||||||||||||||||| ||    
T  50808 cagagacacacacccacatactctttccaaaactcttttttacttcaccgtcattgtaaactaattgagcaagagttgtctttcccaaaccaccaatccc 50709  T
Q  111 aacaatagcaaccaaggagacattctgattttcatgtgattgcctcaacaagcttataatcttctttttatcatcttctcttccaataatctctgattct 210  Q
    ||||||||||||||  || |||| ||| |||||||||| || |||||||||||||| |||||  |||| ||| ||||||||||| || || || |||||     
T  50708 aacaatagcaaccacagaaacatgctggttttcatgtggttacctcaacaagcttaaaatctcattttaatcgtcttctcttccgatgatatcagattcg 50609  T
Q  211 aacacaaaagaactactttcct 232  Q
    ||||||||||||||| ||||||    
T  50608 aacacaaaagaactattttcct 50587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 13 - 224
Target Start/End: Original strand, 3919085 - 3919296
Alignment:
Q  13 gagacacatacccacaaactcttttcaaaccaattttgcacttcagcatcattgtataccaattgagcaagagctgtctttcccaaaccaccaataccaa 112  Q
    |||||||||||||||| |||| |||||||| | |||||||||||  |||||||||||| |||||||||||||| ||||||||| ||||||||||| ||||    
T  3919085 gagacacatacccacatactcctttcaaacgagttttgcacttccacatcattgtatatcaattgagcaagagttgtctttcctaaaccaccaatcccaa 3919184  T
Q  113 caatagcaaccaaggagacattctgattttcatgtgattgcctcaacaagcttataatcttctttttatcatcttctcttccaataatctctgattctaa 212  Q
    ||||| ||||||   ||||||| |||||| |||||| |||| ||||||||||||||||||||||||||||||||||||||||||| || || ||||||||    
T  3919185 caataccaaccacaaagacattttgatttccatgtggttgcatcaacaagcttataatcttctttttatcatcttctcttccaatgatatccgattctaa 3919284  T
Q  213 cacaaaagaact 224  Q
    | |||| |||||    
T  3919285 cgcaaatgaact 3919296  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 121
Target Start/End: Complemental strand, 32408720 - 32408650
Alignment:
Q  51 cacttcagcatcattgtataccaattgagcaagagctgtctttcccaaaccaccaataccaacaatagcaa 121  Q
    ||||||| ||||||| || |||||||| ||||| || ||||||||||| || || |||||||||| |||||    
T  32408720 cacttcatcatcattataaaccaattgcgcaagcgccgtctttcccaacccgcccataccaacaacagcaa 32408650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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