View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11142_high_57 (Length: 249)

Name: NF11142_high_57
Description: NF11142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11142_high_57
NF11142_high_57
[»] chr4 (1 HSPs)
chr4 (1-240)||(48904758-48904997)
[»] chr8 (9 HSPs)
chr8 (5-211)||(10769467-10769669)
chr8 (39-212)||(1948010-1948179)
chr8 (39-199)||(2051987-2052144)
chr8 (39-189)||(2029854-2030001)
chr8 (35-103)||(2034768-2034836)
chr8 (6-107)||(2038817-2038918)
chr8 (39-120)||(2048093-2048174)
chr8 (45-103)||(2059054-2059112)
chr8 (35-199)||(2055840-2056004)
[»] chr2 (3 HSPs)
chr2 (51-102)||(28782875-28782926)
chr2 (48-106)||(28734918-28734976)
chr2 (44-106)||(28742051-28742113)
[»] chr1 (1 HSPs)
chr1 (60-103)||(16441760-16441803)


Alignment Details
Target: chr4 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 48904997 - 48904758
Alignment:
Q  1 ctgctgcatgctttttctacaatggtcataaattatcctcaaggctctatggacctataaaggaactattatctgaagacaatcctcccaaatacagaga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48904997 ctgctgcatgctttttctacaatggtcataaattatcctcaaggctctatggacctataaaggaactattatctgaagacaatcctcccaaatacagaga 48904898  T
Q  101 aaccacaattggagactatgcagtctactctccagcagcaaaaagactaggttgtacttctgttctttcacattacaaaatttgaactaagcaatgtgga 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48904897 aaccacaattggagactatgcagtctactctccagcagcaaaaagactaggttgtacttctgttctttcacattacaaaatttgaactaagcaatgtgga 48904798  T
Q  201 gagaaaaaatagctcataaaattccattggtgtgtctgtg 240  Q
    | |||||||||||||||||| |||||||||||||| ||||    
T  48904797 gggaaaaaatagctcataaagttccattggtgtgtttgtg 48904758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 85; Significance: 1e-40; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 5 - 211
Target Start/End: Original strand, 10769467 - 10769669
Alignment:
Q  5 tgcatgctttttctacaatggtcataaattatcctcaaggctctatggacctataaaggaactattatctgaagacaatcctcccaaatacagagaaacc 104  Q
    |||||| ||||||| ||  |||||||  | |||||||| |||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||    
T  10769467 tgcatgttttttctgcaccggtcataggtcatcctcaaagctctatggacctataaaggaactattatcagaagacaatcctcccatatacagagaaacc 10769566  T
Q  105 acaattggagactatgcagtctactctccagcagcaaaaagactaggttgtacttctgttctttcacattacaaaatttgaactaagcaatgtggagaga 204  Q
     || |||  ||||||| || ||| | |   | ||||||| |||||| | ||||||||| |||| |||||||||| ||||||||||||||||||||| |||    
T  10769567 tcagttgctgactatgtagcctatttt---gaagcaaaaggactagatggtacttctgctcttacacattacaagatttgaactaagcaatgtgga-aga 10769662  T
Q  205 aaaaata 211  Q
    |||||||    
T  10769663 aaaaata 10769669  T

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Target: chr8; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 39 - 212
Target Start/End: Complemental strand, 1948179 - 1948010
Alignment:
Q  39 tcaaggctctatggacctataaaggaactattatctgaagacaatcctcccaaatacagagaaaccacaattggagactatgcagtctactctccagcag 138  Q
    |||| ||||||||||||||| |||||||||||||| ||| | |||||| ||||||| |||||||||||| |||  || ||||||| ||||| |     ||    
T  1948179 tcaaagctctatggacctatgaaggaactattatcagaaaagaatccttccaaatatagagaaaccacagttgctgattatgcagcctacttt---aaag 1948083  T
Q  139 caaaaagactaggttgtacttctgttctttcacattacaaaatttgaactaagcaatgtggagagaaaaaatag 212  Q
    ||||| |||||| | ||||||||| |||| |||||||||| |||||||||| ||| |||||| |||||||||||    
T  1948082 caaaaggactagatggtacttctgctcttacacattacaagatttgaactaggcagtgtgga-agaaaaaatag 1948010  T

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Target: chr8; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 39 - 199
Target Start/End: Original strand, 2051987 - 2052144
Alignment:
Q  39 tcaaggctctatggacctataaaggaactattatctgaagacaatcctcccaaatacagagaaaccacaattggagactatgcagtctactctccagcag 138  Q
    |||| ||||||||||||||| ||||||||  |||| |||||||||||||||||||||||||||||  |  |||  || |||| || ||||| ||    ||    
T  2051987 tcaaagctctatggacctatgaaggaactgctatcagaagacaatcctcccaaatacagagaaacttctgttgctgattatgtagcctactttc---gag 2052083  T
Q  139 caaaaagactaggttgtacttctgttctttcacattacaaaatttgaactaagcaatgtgg 199  Q
    ||||| |||||| | ||||||||| |||| |||||||||| ||||||||||||||||||||    
T  2052084 caaaaggactagatggtacttctgctcttacacattacaagatttgaactaagcaatgtgg 2052144  T

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Target: chr8; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 39 - 189
Target Start/End: Original strand, 2029854 - 2030001
Alignment:
Q  39 tcaaggctctatggacctataaaggaactattatctgaagacaatcctcccaaatacagagaaaccacaattggagactatgcagtctactctccagcag 138  Q
    |||| ||||||||||||||| |||||||||||||| ||| ||||||||||||||||||||||||||||| |||  || | ||||| ||||| |      |    
T  2029854 tcaaagctctatggacctatgaaggaactattatcagaaaacaatcctcccaaatacagagaaaccacagttgctgattttgcagcctacttt---aatg 2029950  T
Q  139 caaaaagactaggttgtacttctgttctttcacattacaaaatttgaacta 189  Q
    ||||| |||||| | ||||||||| |||| |||||||||| ||||||||||    
T  2029951 caaaaggactagatggtacttctgctcttacacattacaagatttgaacta 2030001  T

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Target: chr8; HSP #5
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 35 - 103
Target Start/End: Original strand, 2034768 - 2034836
Alignment:
Q  35 atcctcaaggctctatggacctataaaggaactattatctgaagacaatcctcccaaatacagagaaac 103  Q
    |||||||| |||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||    
T  2034768 atcctcaaagctctatggacctataaaggaactattatcagaagacaatcctcctaaatacagagaaac 2034836  T

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Target: chr8; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 6 - 107
Target Start/End: Original strand, 2038817 - 2038918
Alignment:
Q  6 gcatgctttttctacaatggtcataaattatcctcaaggctctatggacctataaaggaactattatctgaagacaatcctcccaaatacagagaaacca 105  Q
    ||||||||||||| ||  ||||||   | |||||||| |||||||||||| |||||||| |||||||| |||||||||||||| ||||||||||||||||    
T  2038817 gcatgctttttctccacaggtcattggtcatcctcaaagctctatggaccaataaaggatctattatcagaagacaatcctcctaaatacagagaaacca 2038916  T
Q  106 ca 107  Q
    ||    
T  2038917 ca 2038918  T

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Target: chr8; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 39 - 120
Target Start/End: Original strand, 2048093 - 2048174
Alignment:
Q  39 tcaaggctctatggacctataaaggaactattatctgaagacaatcctcccaaatacagagaaaccacaattggagactatg 120  Q
    |||| ||||||||||||||| || ||||||||||| |||||||||||||| |||||||||||||||||| ||| ||||||||    
T  2048093 tcaaagctctatggacctatgaaagaactattatcagaagacaatcctcctaaatacagagaaaccacagttgcagactatg 2048174  T

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Target: chr8; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 45 - 103
Target Start/End: Original strand, 2059054 - 2059112
Alignment:
Q  45 ctctatggacctataaaggaactattatctgaagacaatcctcccaaatacagagaaac 103  Q
    ||||||||||| || |||||||||||||| |||||||||||||||||||||||||||||    
T  2059054 ctctatggaccaatgaaggaactattatcagaagacaatcctcccaaatacagagaaac 2059112  T

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Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 35 - 199
Target Start/End: Original strand, 2055840 - 2056004
Alignment:
Q  35 atcctcaaggctctatggacctataaaggaactattatctgaagacaatcctcccaaatacagagaaaccacaattggagactatgcagtctact-ctcc 133  Q
    |||||||| |||||||||||| || |||||||| ||||| |||||||||||||| ||||||| |||||| ||  |||  || |||| || ||||| ||      
T  2055840 atcctcaaagctctatggaccaatgaaggaactgttatcagaagacaatcctcctaaatacaaagaaactactgttgctgattatgtagcctactacttt 2055939  T
Q  134 agcagcaaaaagactaggttgtacttctgttctttcacattacaaaatttgaactaagcaatgtgg 199  Q
     | ||||||| || ||| | |||||||||  |||  ||||||||||||||||||| ||||||||||    
T  2055940 cg-agcaaaaggagtagatggtacttctgcacttgaacattacaaaatttgaactgagcaatgtgg 2056004  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 51 - 102
Target Start/End: Complemental strand, 28782926 - 28782875
Alignment:
Q  51 ggacctataaaggaactattatctgaagacaatcctcccaaatacagagaaa 102  Q
    ||||||||||| ||| | ||||| |||||||||||||||||||||| |||||    
T  28782926 ggacctataaaagaatttttatcagaagacaatcctcccaaatacaaagaaa 28782875  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 106
Target Start/End: Complemental strand, 28734976 - 28734918
Alignment:
Q  48 tatggacctataaaggaactattatctgaagacaatcctcccaaatacagagaaaccac 106  Q
    |||||||||||||  ||| ||||||| |||||||| ||||||| ||| |||||||||||    
T  28734976 tatggacctataacagaattattatcagaagacaaccctcccagatatagagaaaccac 28734918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 106
Target Start/End: Complemental strand, 28742113 - 28742051
Alignment:
Q  44 gctctatggacctataaaggaactattatctgaagacaatcctcccaaatacagagaaaccac 106  Q
    |||||||||||||||||| ||| | ||||| |||||||| ||||| | ||| |||||||||||    
T  28742113 gctctatggacctataaaagaaattttatcagaagacaaccctccaagatatagagaaaccac 28742051  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 60 - 103
Target Start/End: Complemental strand, 16441803 - 16441760
Alignment:
Q  60 aaggaactattatctgaagacaatcctcccaaatacagagaaac 103  Q
    ||||||||||||||||||||||||||| | ||||| ||||||||    
T  16441803 aaggaactattatctgaagacaatcctgcaaaatatagagaaac 16441760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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