View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11142_high_60 (Length: 246)

Name: NF11142_high_60
Description: NF11142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11142_high_60
NF11142_high_60
[»] chr4 (1 HSPs)
chr4 (31-246)||(2797545-2797760)
[»] chr2 (2 HSPs)
chr2 (33-243)||(29266720-29266930)
chr2 (33-242)||(29186414-29186623)


Alignment Details
Target: chr4 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 31 - 246
Target Start/End: Original strand, 2797545 - 2797760
Alignment:
Q  31 tttctttcagagtgctggacgccttttgcgggctctttttgagattgtcctgaaacgtggctgggcgcaattggctgagaaggccttgaacttatacaag 130  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2797545 tttctttcagagtgctggacgccttttgcgggctctttttgagattgtcctgaaacgtggctgggcgcaattggctgagaaggccttgaacttatacaag 2797644  T
Q  131 atggtgaccaagaggatgtggagtgcccaaacaccacttcgtcagttcaatggaattccaaatgatatattaacaaaattggagaagaagaatttggcat 230  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2797645 atggtgaccaagaggatgtggagtgcccaaacaccacttcgtcagttcaatggaattccaaatgatatattaacaaaattggagaagaagaatttggcat 2797744  T
Q  231 gggaaaagtattatga 246  Q
    ||||||||||||||||    
T  2797745 gggaaaagtattatga 2797760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 155; Significance: 2e-82; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 33 - 243
Target Start/End: Original strand, 29266720 - 29266930
Alignment:
Q  33 tctttcagagtgctggacgccttttgcgggctctttttgagattgtcctgaaacgtggctgggcgcaattggctgagaaggccttgaacttatacaagat 132  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||  ||||||||| ||||||    
T  29266720 tctttcagagtgctggacgccttctgcgggctctttttgagattgtcctaaaacgtggctgggcacaattggctgagaaggctctgaacttatgcaagat 29266819  T
Q  133 ggtgaccaagaggatgtggagtgcccaaacaccacttcgtcagttcaatggaattccaaatgatatattaacaaaattggagaagaagaatttggcatgg 232  Q
    ||||||||||||||||||||||| |||||| || ||||||||||||||||||||||||| |||| ||||||||||||||||||||||| ||||||| |||    
T  29266820 ggtgaccaagaggatgtggagtgtccaaactcctcttcgtcagttcaatggaattccaagtgatgtattaacaaaattggagaagaaggatttggcttgg 29266919  T
Q  233 gaaaagtatta 243  Q
    |||| ||||||    
T  29266920 gaaaggtatta 29266930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 33 - 242
Target Start/End: Complemental strand, 29186623 - 29186414
Alignment:
Q  33 tctttcagagtgctggacgccttttgcgggctctttttgagattgtcctgaaacgtggctgggcgcaattggctgagaaggccttgaacttatacaagat 132  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||  ||||||||| ||||||    
T  29186623 tctttcagagtgctggacgccttttgtgggctctttttgagattgtcctgaaacgtggctgggctcaattggctgagaaggctctgaacttatgcaagat 29186524  T
Q  133 ggtgaccaagaggatgtggagtgcccaaacaccacttcgtcagttcaatggaattccaaatgatatattaacaaaattggagaagaagaatttggcatgg 232  Q
    ||||||||||||||||||||||| |||||| || ||  |||||||||||| ||| |||| | ||||||||||| ||||| |||||||| ||||| | |||    
T  29186523 ggtgaccaagaggatgtggagtgtccaaactcctctgtgtcagttcaatgtaatcccaagtcatatattaacagaattgaagaagaaggatttgacttgg 29186424  T
Q  233 gaaaagtatt 242  Q
    ||||||||||    
T  29186423 gaaaagtatt 29186414  T

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