View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11142_high_66 (Length: 241)
Name: NF11142_high_66
Description: NF11142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11142_high_66 |
 | |
|
| [»] scaffold0113 (1 HSPs) |
| | |
|
| [»] scaffold0024 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 159; Significance: 9e-85; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 27451466 - 27451689
Alignment:
| Q |
1 |
tgttcttataaggtgcttcttctccactcgtctggcattttctttgtcctcataatctcgttgaannnnnnngtgagccacataattcctt-tatcgcca |
99 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||| || ||||| ||| |||||||||||||||| |||||||||| |||||||| |||||||| |
|
|
| T |
27451466 |
tgttcttataaggtgcttcttctccacttgtctggaatattcttcgtcttcataatctcgttgaatttttttgtgagccacacaattccttatatcgcca |
27451565 |
T |
|
| Q |
100 |
agacttttccacacttcgataggtatgttatccggcccaactgccttgccattactcatccttttcaatgcttttttcaccttgtgctcttgaattcgac |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
27451566 |
agacttttccacacttcgataggtatgttatccggcccaacttccttgccattactcatccttttcaatgcttttttcacctcgtgctcttgaattcgac |
27451665 |
T |
|
| Q |
200 |
gataatagttatagttccggccct |
223 |
Q |
| |
|
|||||||||||||||| ||||||| |
|
|
| T |
27451666 |
gataatagttatagtttcggccct |
27451689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 13 - 229
Target Start/End: Original strand, 23907618 - 23907834
Alignment:
| Q |
13 |
gtgcttcttctccactcgtctggcattttctttgtcctcataatctcgttgaannnnnnngtgagccacataattcctttatcgccaagacttttccaca |
112 |
Q |
| |
|
|||||||||||||||||||| |||||||||| ||||||||||||||||| || |||||||||| ||| ||| ||||||||||||| ||||||| |
|
|
| T |
23907618 |
gtgcttcttctccactcgtccagcattttcttcgtcctcataatctcgttaaaaaggttggtgagccacacaatccctctatcgccaagactcttccaca |
23907717 |
T |
|
| Q |
113 |
cttcgataggtatgttatccggcccaactgccttgccattactcatccttttcaatgcttttttcaccttgtgctcttgaattcgacgataatagttata |
212 |
Q |
| |
|
|||||||||||||||| ||| ||||||||||||||||| || ||||||||||||| |||| | | |||| |||||||||||| ||||| ||||| ||||| |
|
|
| T |
23907718 |
cttcgataggtatgttgtccagcccaactgccttgccactaatcatccttttcaacgcttctctaacctcgtgctcttgaatccgacggtaataattata |
23907817 |
T |
|
| Q |
213 |
gttccggccctgctctc |
229 |
Q |
| |
|
||| ||| ||| ||||| |
|
|
| T |
23907818 |
gtttcggtcctcctctc |
23907834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 73 - 229
Target Start/End: Original strand, 48623903 - 48624059
Alignment:
| Q |
73 |
gtgagccacataattcctttatcgccaagacttttccacacttcgataggtatgttatccggcccaactgccttgccattactcatccttttcaatgctt |
172 |
Q |
| |
|
|||||||||| ||| ||| ||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| |||| |
|
|
| T |
48623903 |
gtgagccacacaatccctctatcgccaagactcttccacacttcgataggtatgttgtccggcccaactgccttgccactactcatccttttcaacgctt |
48624002 |
T |
|
| Q |
173 |
ttttcaccttgtgctcttgaattcgacgataatagttatagttccggccctgctctc |
229 |
Q |
| |
|
| | |||| |||||||||||| |||||||||||||||||||| ||| ||| ||||| |
|
|
| T |
48624003 |
ctataacctcgtgctcttgaatccgacgataatagttatagtttcggtcctcctctc |
48624059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 19 - 215
Target Start/End: Original strand, 16001264 - 16001457
Alignment:
| Q |
19 |
cttctccactcgtctggcattttctttgtcctcataatctcgttgaannnnnnngtgagccacataattcctttatcgccaagacttttccacacttcga |
118 |
Q |
| |
|
|||||||||||||| || |||||||| ||||||||||||||||| || |||| ||||| ||||||| ||| |||||||||||||||||||||| |
|
|
| T |
16001264 |
cttctccactcgtccggtattttcttcgtcctcataatctcgttaaaaagtttggtgacccacacaattcct--atctccaagacttttccacacttcga |
16001361 |
T |
|
| Q |
119 |
taggtatgttatccggcccaactgccttgccattactcatccttttcaatgcttttttcaccttgtgctcttgaattcgacgataatagttatagtt |
215 |
Q |
| |
|
|||||||| | || | |||||| |||| ||||| ||||||||||||| |||| ||| |||| ||||||||||| ||| |||||||| ||||||| |
|
|
| T |
16001362 |
aaggtatgtcgtgcgactcaactgtcttgtcattaatcatccttttcaacgcttcttttacctcgtgctcttgaa-ccgatgataatagctatagtt |
16001457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 136 - 215
Target Start/End: Original strand, 55834038 - 55834117
Alignment:
| Q |
136 |
ccaactgccttgccattactcatccttttcaatgcttttttcaccttgtgctcttgaattcgacgataatagttatagtt |
215 |
Q |
| |
|
||||||||||||||||||||||||||| |||| ||| ||| |||| || |||||||| |||||||| ||||||||||| |
|
|
| T |
55834038 |
ccaactgccttgccattactcatccttgtcaactcttcttttacctcgtattcttgaatccgacgatagtagttatagtt |
55834117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 139 - 215
Target Start/End: Original strand, 55769785 - 55769861
Alignment:
| Q |
139 |
actgccttgccattactcatccttttcaatgcttttttcaccttgtgctcttgaattcgacgataatagttatagtt |
215 |
Q |
| |
|
|||||||||||||||||||||||| |||| ||| ||| |||| || |||||||| |||||||| ||||||||||| |
|
|
| T |
55769785 |
actgccttgccattactcatccttgtcaactcttcttttacctcgtattcttgaatccgacgatagtagttatagtt |
55769861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 90 - 172
Target Start/End: Complemental strand, 37250093 - 37250011
Alignment:
| Q |
90 |
tttatcgccaagacttttccacacttcgataggtatgttatccggcccaactgccttgccattactcatccttttcaatgctt |
172 |
Q |
| |
|
||||||| |||||||||| || | ||| |||| |||||||| || |||||| ||| |||||||||||||||||||||||| |
|
|
| T |
37250093 |
tttatcgtcaagactttttcatagttcaatagatatgttatttggtccaacttcctaatcattactcatccttttcaatgctt |
37250011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 142; Significance: 1e-74; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 9 - 231
Target Start/End: Original strand, 15216581 - 15216803
Alignment:
| Q |
9 |
taaggtgcttcttctccactcgtctggcattttctttgtcctcataatctcgttgaannnnnnngtgagccacataattcctttatcgccaagacttttc |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| ||| | ||| ||||||| |
|
|
| T |
15216581 |
taaggtgcttcttctccactcgtctggcattttcttcgtcctcataatctcgttgaaaagttttgtgagccacataattcctctatagtcaatacttttc |
15216680 |
T |
|
| Q |
109 |
cacacttcgataggtatgttatccggcccaactgccttgccattactcatccttttcaatgcttttttcaccttgtgctcttgaattcgacgataatagt |
208 |
Q |
| |
|
||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| || |||||| ||||| |||||||||||| |
|
|
| T |
15216681 |
cacactttgataggtatgttgtccggcccaactgccttgccattactcatccttttcaatgcttctttcatctcgtgctcctgaatctgacgataatagt |
15216780 |
T |
|
| Q |
209 |
tatagttccggccctgctctctg |
231 |
Q |
| |
|
||||||||||| ||| ||||||| |
|
|
| T |
15216781 |
tatagttccggtcctcctctctg |
15216803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 13 - 215
Target Start/End: Complemental strand, 36544118 - 36543916
Alignment:
| Q |
13 |
gtgcttcttctccactcgtctggcattttctttgtcctcataatctcgttgaannnnnnngtgagccacataattcctttatcgccaagacttttccaca |
112 |
Q |
| |
|
|||||||||||||||||||| | ||||||||| |||||||||||||| || || |||||||||| ||| ||| ||||||||||||| ||||||| |
|
|
| T |
36544118 |
gtgcttcttctccactcgtccgacattttcttcgtcctcataatctctttaaaaaggtttgtgagccacacaatccctctatcgccaagactcttccaca |
36544019 |
T |
|
| Q |
113 |
cttcgataggtatgttatccggcccaactgccttgccattactcatccttttcaatgcttttttcaccttgtgctcttgaattcgacgataatagttata |
212 |
Q |
| |
|
||| |||||||||||| ||||||||||||||||||||| ||| |||||||||||| |||| | | |||| |||||||||||| ||||||||||| ||||| |
|
|
| T |
36544018 |
ctttgataggtatgttgtccggcccaactgccttgccactacccatccttttcaacgcttctctaacctcgtgctcttgaatccgacgataataattata |
36543919 |
T |
|
| Q |
213 |
gtt |
215 |
Q |
| |
|
||| |
|
|
| T |
36543918 |
gtt |
36543916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 17 - 215
Target Start/End: Complemental strand, 13588669 - 13588472
Alignment:
| Q |
17 |
ttcttctccactcgtctggcattttctttgtcctcataatctcgttgaannnnnnngtgagccacataattcctttatcgccaagacttttccacacttc |
116 |
Q |
| |
|
||||| ||||||| |||| ||| ||||||||||| ||||||| ||| || |||||||||||||||||| |||| |||| |||||| |||||| | |
|
|
| T |
13588669 |
ttcttttccactcatctgacatcttctttgtccttataatcttgttaaaaagtttagtgagccacataattcctctatccccaa-actttttcacactcc |
13588571 |
T |
|
| Q |
117 |
gataggtatgttatccggcccaactgccttgccattactcatccttttcaatgcttttttcaccttgtgctcttgaattcgacgataatagttatagtt |
215 |
Q |
| |
|
|||||||| || || ||||||||| | |||||||| |||| ||||||||||||| ||| |||| |||| ||||||| | |||||| ||||||||||| |
|
|
| T |
13588570 |
aataggtatattgtctagcccaactgtcatgccattattcatgcttttcaatgcttcttttacctcgtgcgcttgaatcctacgatagtagttatagtt |
13588472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 141 - 215
Target Start/End: Complemental strand, 41148374 - 41148300
Alignment:
| Q |
141 |
tgccttgccattactcatccttttcaatgcttttttcaccttgtgctcttgaattcgacgataatagttatagtt |
215 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||| || |||| ||||||||| ||| ||| ||||||||||| |
|
|
| T |
41148374 |
tgccttgccattactcatccttttcaacgctttttttactatgtgttcttgaattagacaatagtagttatagtt |
41148300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 130; Significance: 2e-67; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 9 - 215
Target Start/End: Complemental strand, 32629582 - 32629376
Alignment:
| Q |
9 |
taaggtgcttcttctccactcgtctggcattttctttgtcctcataatctcgttgaannnnnnngtgagccacataattcctttatcgccaagacttttc |
108 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| || |||||||||||||||| |||||||||| ||||||| ||||||||||||||||| |
|
|
| T |
32629582 |
taaggtgcttcttctccactcgtcaagcattttcttcgttttcataatctcgttgaaaagttttgtgagccacacaattcctctatcgccaagacttttc |
32629483 |
T |
|
| Q |
109 |
cacacttcgataggtatgttatccggcccaactgccttgccattactcatccttttcaatgcttttttcaccttgtgctcttgaattcgacgataatagt |
208 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| |||| |||||||| |||||| ||||| ||||||||||||| |
|
|
| T |
32629482 |
cacacttcgataggtatgttgtccggcccaactgccttaccattactcatccttttcaacgcttctttcacctcgtgctcctgaatccgacgataatagt |
32629383 |
T |
|
| Q |
209 |
tatagtt |
215 |
Q |
| |
|
||||||| |
|
|
| T |
32629382 |
tatagtt |
32629376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 17 - 207
Target Start/End: Complemental strand, 36650956 - 36650766
Alignment:
| Q |
17 |
ttcttctccactcgtctggcattttctttgtcctcataatctcgttgaannnnnnngtgagccacataattcctttatcgccaagacttttccacacttc |
116 |
Q |
| |
|
|||||||||||||||| ||||||||||| |||||||||||||||| || |||||||||| ||| ||| ||||||||||||| ||||||||||| |
|
|
| T |
36650956 |
ttcttctccactcgtccggcattttcttcgtcctcataatctcgtcaaaaaggtttgtgagccacacaatccctctatcgccaagactcttccacacttc |
36650857 |
T |
|
| Q |
117 |
gataggtatgttatccggcccaactgccttgccattactcatccttttcaatgcttttttcaccttgtgctcttgaattcgacgataatag |
207 |
Q |
| |
|
|||||||||||| || |||||||||||||||||| |||||||||||||||| |||| | | |||| |||||||||||| |||||||||||| |
|
|
| T |
36650856 |
gataggtatgttgtctggcccaactgccttgccactactcatccttttcaacgcttctctaacctcgtgctcttgaatccgacgataatag |
36650766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 13 - 229
Target Start/End: Complemental strand, 11592655 - 11592440
Alignment:
| Q |
13 |
gtgcttcttctccactcgtctggcattttctttgtcctcataatctcgttgaannnnnnngtgagccacataattcctttatcgccaagacttttccaca |
112 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| ||||||||| ||||||| || ||||| |||| ||| ||| ||||||||||||| ||||||| |
|
|
| T |
11592655 |
gtgcttcttctccactcgtccggcattttcttcgtcctcatagtctcgttaaaaaggtttgtgagtcacacaatccctctatcgccaagactcttccaca |
11592556 |
T |
|
| Q |
113 |
cttcgataggtatgttatccggcccaactgccttgccattactcatccttttcaatgcttttttcaccttgtgctcttgaattcgacgataatagttata |
212 |
Q |
| |
|
||||| |||| ||||| ||||||||||||||||||||| |||||||||||||||| |||| | | |||| |||||||||||| ||||||||||| ||||| |
|
|
| T |
11592555 |
cttcg-tagggatgttgtccggcccaactgccttgccactactcatccttttcaacgcttctctaacctcgtgctcttgaatccgacgataataattata |
11592457 |
T |
|
| Q |
213 |
gttccggccctgctctc |
229 |
Q |
| |
|
||| ||| ||| ||||| |
|
|
| T |
11592456 |
gtttcggtcctcctctc |
11592440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 10 - 231
Target Start/End: Original strand, 24178508 - 24178730
Alignment:
| Q |
10 |
aaggtgcttcttctccactcgtctggcattttctttgtcctcataatctcgttgaannnnnnngtgagccacataattcctttatcgccaagacttttc- |
108 |
Q |
| |
|
||||||||| |||||||||| |||| ||||||||| |||||||||||||| ||||| |||||||||| ||||||| |||||||||||||||| |
|
|
| T |
24178508 |
aaggtgcttattctccactcctctgacattttcttcgtcctcataatctcattgaaaagttttgtgagccacacaattcctctatcgccaagactttttt |
24178607 |
T |
|
| Q |
109 |
cacacttcgataggtatgttatccggcccaactgccttgccattactcatccttttcaatgcttttttcaccttgtgctcttgaattcgacgataatagt |
208 |
Q |
| |
|
|||||||||||| ||||||| | ||||||||||||||| |||||| |||||||||||| ||||| |||||||| ||||| ||||| |||| |||||||| |
|
|
| T |
24178608 |
cacacttcgatatgtatgttgttcggcccaactgcctttccattagtcatccttttcattgcttctttcacctcgtgctactgaatccgacaataatagt |
24178707 |
T |
|
| Q |
209 |
tatagttccggccctgctctctg |
231 |
Q |
| |
|
||||| | ||| ||| ||||||| |
|
|
| T |
24178708 |
tataggttcggtcctcctctctg |
24178730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 13 - 215
Target Start/End: Original strand, 33351122 - 33351324
Alignment:
| Q |
13 |
gtgcttcttctccactcgtctggcattttctttgtcctcataatctcgttgaannnnnnngtgagccacataattcctttatcgccaagacttttccaca |
112 |
Q |
| |
|
|||||||||||||||||||| | ||||||||| ||||| ||||||||||| || | |||||||| | | ||| ||||||||||||| ||||||| |
|
|
| T |
33351122 |
gtgcttcttctccactcgtccgacattttcttcgtccttataatctcgttaaaaaggtttgcgagccacacagtccctctatcgccaagactcttccaca |
33351221 |
T |
|
| Q |
113 |
cttcgataggtatgttatccggcccaactgccttgccattactcatccttttcaatgcttttttcaccttgtgctcttgaattcgacgataatagttata |
212 |
Q |
| |
|
|||||||||||||||| |||||||||||||||| | || ||| |||||||||||| |||| | | |||| |||||||||||| ||||||||||| ||||| |
|
|
| T |
33351222 |
cttcgataggtatgttgtccggcccaactgcctcgtcactacccatccttttcaacgcttctctaacctcgtgctcttgaatccgacgataataattata |
33351321 |
T |
|
| Q |
213 |
gtt |
215 |
Q |
| |
|
||| |
|
|
| T |
33351322 |
gtt |
33351324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 126; Significance: 4e-65; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 9 - 231
Target Start/End: Original strand, 20428949 - 20429171
Alignment:
| Q |
9 |
taaggtgcttcttctccactcgtctggcattttctttgtcctcataatctcgttgaannnnnnngtgagccacataattcctttatcgccaagacttttc |
108 |
Q |
| |
|
||||||||||||||| || ||||||||||||||||| |||||||||||||||||||| |||||||||| ||||||| ||||||| |||||||| |
|
|
| T |
20428949 |
taaggtgcttcttcttcattcgtctggcattttcttcgtcctcataatctcgttgaacagttttgtgagccacacaattcctccatcgccatgacttttc |
20429048 |
T |
|
| Q |
109 |
cacacttcgataggtatgttatccggcccaactgccttgccattactcatccttttcaatgcttttttcaccttgtgctcttgaattcgacgataatagt |
208 |
Q |
| |
|
|||||| ||||||||||||| || ||||||||||||||||||||||||||||||||||| | || |||||| | |||||| ||||| ||||||||||||| |
|
|
| T |
20429049 |
cacactccgataggtatgttttcgggcccaactgccttgccattactcatccttttcaacggttctttcacttcgtgctcctgaatccgacgataatagt |
20429148 |
T |
|
| Q |
209 |
tatagttccggccctgctctctg |
231 |
Q |
| |
|
||||||||||| ||| ||||||| |
|
|
| T |
20429149 |
tatagttccggtcctcctctctg |
20429171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 9 - 219
Target Start/End: Complemental strand, 9705768 - 9705561
Alignment:
| Q |
9 |
taaggtgcttcttctccactcgtctggcattttctttgtcctcataatctcgttgaannnnnnngtgagccacataattcctttatcgccaagacttttc |
108 |
Q |
| |
|
|||||||||||||||||||||||| | ||||||||| || ||||||||||||||||| |||||||||| ||||||| ||||||||||||||||| |
|
|
| T |
9705768 |
taaggtgcttcttctccactcgtcggacattttcttcgttctcataatctcgttgaaaagttttgtgagccacacaattcctctatcgccaagacttttc |
9705669 |
T |
|
| Q |
109 |
cacacttcgataggtatgttatccggcccaactgccttgccattactcatccttttcaatgcttttttcaccttgtgctcttgaattcgacgataatagt |
208 |
Q |
| |
|
|||||||||||||||||||| |||| ||||||||||| ||||||| ||| |||||| |||| |||||| | |||||| ||||| ||||||||||||| |
|
|
| T |
9705668 |
cacacttcgataggtatgttgtccgatccaactgccttaccattac---tccctttcaacgcttctttcacttcgtgctcctgaatccgacgataatagt |
9705572 |
T |
|
| Q |
209 |
tatagttccgg |
219 |
Q |
| |
|
||| ||||||| |
|
|
| T |
9705571 |
tattgttccgg |
9705561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 9 - 140
Target Start/End: Original strand, 5260560 - 5260691
Alignment:
| Q |
9 |
taaggtgcttcttctccactcgtctggcattttctttgtcctcataatctcgttgaannnnnnngtgagccacataattcctttatcgccaagacttttc |
108 |
Q |
| |
|
||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| ||||||| ||||||||||||||||| |
|
|
| T |
5260560 |
taaggtgattcttctccactcgtccggcattttctttgtcctcataatctcgttgaaaagttttgtgagccacacaattcctctatcgccaagacttttc |
5260659 |
T |
|
| Q |
109 |
cacacttcgataggtatgttatccggcccaac |
140 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| |
|
|
| T |
5260660 |
cacacttcgataggtatgttgtccggcccaac |
5260691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 76 - 215
Target Start/End: Complemental strand, 6081351 - 6081212
Alignment:
| Q |
76 |
agccacataattcctttatcgccaagacttttccacacttcgataggtatgttatccggcccaactgccttgccattactcatccttttcaatgcttttt |
175 |
Q |
| |
|
||||||| ||| ||| ||||||||||||| |||||||||| |||||||||||| || |||||||||||||||||| |||||||||||||||| |||| |
|
|
| T |
6081351 |
agccacacaatccctctatcgccaagactcttccacactttgataggtatgttttctggcccaactgccttgccactactcatccttttcaacgcttccc |
6081252 |
T |
|
| Q |
176 |
tcaccttgtgctcttgaattcgacgataatagttatagtt |
215 |
Q |
| |
|
| |||| ||||||||||| ||||||||||| |||||||| |
|
|
| T |
6081251 |
taacctcatgctcttgaatccgacgataataattatagtt |
6081212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 17 - 212
Target Start/End: Complemental strand, 3629253 - 3629059
Alignment:
| Q |
17 |
ttcttctccactcgtctggcattttctttgtcctcataatctcgttgaannnnnnngtgagccacataattcctttatcgccaagacttttccacacttc |
116 |
Q |
| |
|
|||||||| |||||||| |||||||||||||||||||| || || || |||||| || ||||| | |||| |||||| ||||||| ||||| |
|
|
| T |
3629253 |
ttcttctctactcgtctaaaattttctttgtcctcataatttcattaaaaagtttggtgagctacccaattcatctatctccaagatttttccatacttc |
3629154 |
T |
|
| Q |
117 |
gataggtatgttatccggcccaactgccttgccattactcatccttttcaatgcttttttcaccttgtgctcttgaattcgacgataatagttata |
212 |
Q |
| |
|
| | |||||| || |||||||||| |||||||||| ||||| ||||||| ||| ||| ||||||| | |||||| |||||||||||||||| |
|
|
| T |
3629153 |
aaaaagtatgtcatatggcccaactgtcttgccattattcatcattttcaacacttgttt-accttgtattattgaatcagacgataatagttata |
3629059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 13 - 62
Target Start/End: Complemental strand, 6082355 - 6082306
Alignment:
| Q |
13 |
gtgcttcttctccactcgtctggcattttctttgtcctcataatctcgtt |
62 |
Q |
| |
|
|||||||||||||||||||| | ||||||||| ||||||||||||||||| |
|
|
| T |
6082355 |
gtgcttcttctccactcgtccgacattttcttcgtcctcataatctcgtt |
6082306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 203
Target Start/End: Original strand, 17223047 - 17223115
Alignment:
| Q |
135 |
cccaactgccttgccattactcatccttttcaatgcttttttcaccttgtgctcttgaattcgacgata |
203 |
Q |
| |
|
||||||| ||||| |||||||||| ||||| |||| || ||| |||| || ||||||||||||||||| |
|
|
| T |
17223047 |
cccaactaccttgtcattactcattctttttaatgtttcttttacctcttgttcttgaattcgacgata |
17223115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 116; Significance: 4e-59; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 13 - 229
Target Start/End: Original strand, 49348717 - 49348933
Alignment:
| Q |
13 |
gtgcttcttctccactcgtctggcattttctttgtcctcataatctcgttgaannnnnnngtgagccacataattcctttatcgccaagacttttccaca |
112 |
Q |
| |
|
|||||||||||||||||||| | ||||||||| ||||||||||||||||| || |||||||||| ||| ||| ||||||||||||| ||||||| |
|
|
| T |
49348717 |
gtgcttcttctccactcgtccgacattttcttcgtcctcataatctcgttaaaaaggtttgtgagccacacaatccctgtatcgccaagactcttccaca |
49348816 |
T |
|
| Q |
113 |
cttcgataggtatgttatccggcccaactgccttgccattactcatccttttcaatgcttttttcaccttgtgctcttgaattcgacgataatagttata |
212 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||| |||||||||||||||| |||| | | |||| |||||||||||| ||||||||||| ||||| |
|
|
| T |
49348817 |
cttcgataggtatgttgtccggcccaactgccttgccactactcatccttttcaacgcttctctaacctcgtgctcttgaatccgacgataataattata |
49348916 |
T |
|
| Q |
213 |
gttccggccctgctctc |
229 |
Q |
| |
|
||| ||| ||| ||||| |
|
|
| T |
49348917 |
gtttcggtcctcctctc |
49348933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 13 - 215
Target Start/End: Original strand, 51442080 - 51442282
Alignment:
| Q |
13 |
gtgcttcttctccactcgtctggcattttctttgtcctcataatctcgttgaannnnnnngtgagccacataattcctttatcgccaagacttttccaca |
112 |
Q |
| |
|
|||||||||||||||||||| | ||||||||| ||||||||||||||||| || |||||||||| ||| ||| ||||||||||||| ||||||| |
|
|
| T |
51442080 |
gtgcttcttctccactcgtccgacattttcttcgtcctcataatctcgttaaaaaggtttgtgagccacacaatccctctatcgccaagactcttccaca |
51442179 |
T |
|
| Q |
113 |
cttcgataggtatgttatccggcccaactgccttgccattactcatccttttcaatgcttttttcaccttgtgctcttgaattcgacgataatagttata |
212 |
Q |
| |
|
||||||||||||||| || |||||| ||||||||||| |||||||||||||||| |||| | | |||| |||||||||||| ||||||||||| ||||| |
|
|
| T |
51442180 |
tttcgataggtatgttgtctggcccagctgccttgccactactcatccttttcaacgcttctctaacctcgtgctcttgaatccgacgataataattata |
51442279 |
T |
|
| Q |
213 |
gtt |
215 |
Q |
| |
|
||| |
|
|
| T |
51442280 |
gtt |
51442282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 13 - 167
Target Start/End: Original strand, 35829705 - 35829859
Alignment:
| Q |
13 |
gtgcttcttctccactcgtctggcattttctttgtcctcataatctcgttgaannnnnnngtgagccacataattcctttatcgccaagacttttccaca |
112 |
Q |
| |
|
||||||||||||||||| | ||||||||||| |||||||||||| ||||| || ||||||||| ||| |||||| | |||||||||||||||| |
|
|
| T |
35829705 |
gtgcttcttctccactcatttggcattttctatgtcctcataatttcgttaaaaaatttggtgagccactaaatgcctttaactccaagacttttccaca |
35829804 |
T |
|
| Q |
113 |
cttcgataggtatgttatccggcccaactgccttgccattactcatccttttcaa |
167 |
Q |
| |
|
|||| ||||||||| | || ||||||||||| |||| |||||||||| ||||||| |
|
|
| T |
35829805 |
cttcaataggtatgctgtctggcccaactgctttgctattactcatcattttcaa |
35829859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 136 - 215
Target Start/End: Original strand, 32405891 - 32405970
Alignment:
| Q |
136 |
ccaactgccttgccattactcatccttttcaatgcttttttcaccttgtgctcttgaattcgacgataatagttatagtt |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||| ||| || |||||||| ||| |||| ||||||||||| |
|
|
| T |
32405891 |
ccaactgccttgccattactcatccttttcaatgcttcttttaccacatgttcttgaatccgatgatagtagttatagtt |
32405970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 13 - 62
Target Start/End: Original strand, 29173847 - 29173896
Alignment:
| Q |
13 |
gtgcttcttctccactcgtctggcattttctttgtcctcataatctcgtt |
62 |
Q |
| |
|
||||||||||||||||||||||||||||||||| | | |||||||||||| |
|
|
| T |
29173847 |
gtgcttcttctccactcgtctggcattttctttattcacataatctcgtt |
29173896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 114; Significance: 6e-58; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 13 - 215
Target Start/End: Complemental strand, 8179759 - 8179557
Alignment:
| Q |
13 |
gtgcttcttctccactcgtctggcattttctttgtcctcataatctcgttgaannnnnnngtgagccacataattcctttatcgccaagacttttccaca |
112 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| ||||||||||||||||| || |||||||||| ||| ||| |||||| |||||||||||||| |
|
|
| T |
8179759 |
gtgcttcttctccactcgtctgacattttcttcgtcctcataatctcgttaaaaaggtttgtgagccacacaatccctctatcgctaagacttttccaca |
8179660 |
T |
|
| Q |
113 |
cttcgataggtatgttatccggcccaactgccttgccattactcatccttttcaatgcttttttcaccttgtgctcttgaattcgacgataatagttata |
212 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||| || ||||||||||||| |||| | | |||| |||||||||||| ||||||||||| ||||| |
|
|
| T |
8179659 |
cttcgataggtatgttgtccggcccaactgccttgccactaatcatccttttcaacgcttctctaacctcgtgctcttgaatccgacgataataattata |
8179560 |
T |
|
| Q |
213 |
gtt |
215 |
Q |
| |
|
||| |
|
|
| T |
8179559 |
gtt |
8179557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 73 - 164
Target Start/End: Complemental strand, 37281014 - 37280923
Alignment:
| Q |
73 |
gtgagccacataattcctttatcgccaagacttttccacacttcgataggtatgttatccggcccaactgccttgccattactcatcctttt |
164 |
Q |
| |
|
|||||||||| ||||||| ||| |||||||||||||||||||| ||| ||||||| || ||||||||||||||| ||||||||||| |||| |
|
|
| T |
37281014 |
gtgagccacacaattcctctatatccaagacttttccacacttcaatatgtatgttgtctggcccaactgccttgtcattactcatcttttt |
37280923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 17 - 163
Target Start/End: Original strand, 11502833 - 11502979
Alignment:
| Q |
17 |
ttcttctccactcgtctggcattttctttgtcctcataatctcgttgaannnnnnngtgagccacataattcctttatcgccaagacttttccacacttc |
116 |
Q |
| |
|
||||||||||||| || |||||| |||||||||||||||| ||| | |||||||||| ||||||||||| |||||||||||||||||||| |
|
|
| T |
11502833 |
ttcttctccactcatcgaacattttatttgtcctcataatctagttagaaagattggtgagccacactattcctttatctccaagacttttccacacttc |
11502932 |
T |
|
| Q |
117 |
gataggtatgttatccggcccaactgccttgccattactcatccttt |
163 |
Q |
| |
|
|||| ||| || || |||||| ||| ||| ||||||||||||||| |
|
|
| T |
11502933 |
aatagatatcttgtctagcccaattgcattgtcattactcatccttt |
11502979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 100 - 215
Target Start/End: Complemental strand, 28409817 - 28409702
Alignment:
| Q |
100 |
agacttttccacacttcgataggtatgttatccggcccaactgccttgccattactcatccttttcaatgcttttttcaccttgtgctcttgaattcgac |
199 |
Q |
| |
|
|||||||||||||||| || ||||| | || | | ||| |||||||| |||||| ||| ||||||||| || ||| |||| ||| ||||||| | || |
|
|
| T |
28409817 |
agacttttccacacttgaattggtatactgtctgactcaattgccttgcaattactaatcattttcaatgtttcttttacctcgtgtgcttgaatcctac |
28409718 |
T |
|
| Q |
200 |
gataatagttatagtt |
215 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
28409717 |
gataatagttatagtt |
28409702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 104; Significance: 6e-52; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 13 - 213
Target Start/End: Original strand, 2076790 - 2076990
Alignment:
| Q |
13 |
gtgcttcttctccactcgtctggcattttctttgtcctcataatctcgttgaannnnnnngtgagccacataattcctttatcgccaagacttttccaca |
112 |
Q |
| |
|
|||||||||||||||||||| | ||||||||| ||||||||||| ||||| || |||||||||| ||| ||| ||||||||||||| ||||||| |
|
|
| T |
2076790 |
gtgcttcttctccactcgtccgacattttcttcgtcctcataatgtcgttaaaagggtctgtgagccacacaatccctctatcgccaagactcttccaca |
2076889 |
T |
|
| Q |
113 |
cttcgataggtatgttatccggcccaactgccttgccattactcatccttttcaatgcttttttcaccttgtgctcttgaattcgacgataatagttata |
212 |
Q |
| |
|
||| |||||||||||| ||||||||||||||||||||| |||||||||||||||| |||| | | |||| |||||||||||| ||||||||||| ||||| |
|
|
| T |
2076890 |
cttggataggtatgttgtccggcccaactgccttgccactactcatccttttcaacgcttctctaacctcgtgctcttgaatccgacgataataattata |
2076989 |
T |
|
| Q |
213 |
g |
213 |
Q |
| |
|
| |
|
|
| T |
2076990 |
g |
2076990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 13 - 229
Target Start/End: Complemental strand, 20317957 - 20317741
Alignment:
| Q |
13 |
gtgcttcttctccactcgtctggcattttctttgtcctcataatctcgttgaannnnnnngtgagccacataattcctttatcgccaagacttttccaca |
112 |
Q |
| |
|
|||||||||||||||||||| | ||||||||| ||||||||||||||||| || |||||||||| ||| || ||||||||||||| ||||||| |
|
|
| T |
20317957 |
gtgcttcttctccactcgtccgacattttcttcgtcctcataatctcgttaaaaaggtttgtgagccacacaatctctctatcgccaagactcttccaca |
20317858 |
T |
|
| Q |
113 |
cttcgataggtatgttatccggcccaactgccttgccattactcatccttttcaatgcttttttcaccttgtgctcttgaattcgacgataatagttata |
212 |
Q |
| |
|
||| |||| ||||||| |||||||||||| |||| ||| |||||||||||||||| |||| | | ||||||||||||||||| | ||||||||| ||||| |
|
|
| T |
20317857 |
cttggatatgtatgttgtccggcccaactaccttaccactactcatccttttcaacgcttctctaaccttgtgctcttgaatccaacgataataattata |
20317758 |
T |
|
| Q |
213 |
gttccggccctgctctc |
229 |
Q |
| |
|
||| ||| ||| ||||| |
|
|
| T |
20317757 |
gtttcggtcctcctctc |
20317741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 13 - 229
Target Start/End: Original strand, 1288844 - 1289060
Alignment:
| Q |
13 |
gtgcttcttctccactcgtctggcattttctttgtcctcataatctcgttgaannnnnnngtgagccacataattcctttatcgccaagacttttccaca |
112 |
Q |
| |
|
||||||||||||||||||| | ||||||||| ||||||||||||||||| || |||||||| | ||| ||| |||| |||||||| ||||||| |
|
|
| T |
1288844 |
gtgcttcttctccactcgttcgacattttcttcgtcctcataatctcgttaaaaaggtttgtgagccatacaatccctctatcaccaagactcttccaca |
1288943 |
T |
|
| Q |
113 |
cttcgataggtatgttatccggcccaactgccttgccattactcatccttttcaatgcttttttcaccttgtgctcttgaattcgacgataatagttata |
212 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| | ||| | |||||||||||||| |||| | | |||| |||||||||||| ||||||||||| ||||| |
|
|
| T |
1288944 |
cttcgataggtatgttgtccggcccaactgccctaccactcctcatccttttcaacgcttctctaacctcgtgctcttgaatccgacgataataattata |
1289043 |
T |
|
| Q |
213 |
gttccggccctgctctc |
229 |
Q |
| |
|
||| ||| ||| ||||| |
|
|
| T |
1289044 |
gtttcggtcctcctctc |
1289060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 13 - 199
Target Start/End: Complemental strand, 24177490 - 24177304
Alignment:
| Q |
13 |
gtgcttcttctccactcgtctggcattttctttgtcctcataatctcgttgaannnnnnngtgagccacataattcctttatcgccaagacttttccaca |
112 |
Q |
| |
|
|||||| |||||||||| | ||||||||||| ||||||||||||| ||| || |||||||||| ||| ||| ||||||||||||| ||||||| |
|
|
| T |
24177490 |
gtgctttttctccactcattcggcattttcttcgtcctcataatcttgttaaaaaggtttgtgagccacacaatccctctatcgccaagactcttccaca |
24177391 |
T |
|
| Q |
113 |
cttcgataggtatgttatccggcccaactgccttgccattactcatccttttcaatgcttttttcaccttgtgctcttgaattcgac |
199 |
Q |
| |
|
||||||||||||| || ||||||||||||||||||||| |||||||||||||||| |||| | | |||| ||||||||||| |||| |
|
|
| T |
24177390 |
cttcgataggtatattgtccggcccaactgccttgccactactcatccttttcaacgcttctctaacctcatgctcttgaatccgac |
24177304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 17 - 215
Target Start/End: Complemental strand, 26921 - 26723
Alignment:
| Q |
17 |
ttcttctccactcgtctggcattttctttgtcctcataatctcgttgaannnnnnngtgagccacataattcctttatcgccaagacttttccacacttc |
116 |
Q |
| |
|
||||| ||||||| || | ||||||||||||||||||||||||||| || |||||||||| ||||||| |||| |||||||||||||||||||| |
|
|
| T |
26921 |
ttcttttccactcatccgacattttctttgtcctcataatctcgttaaaaagtttggtgagccacacaattcctctatctccaagacttttccacacttc |
26822 |
T |
|
| Q |
117 |
gataggtatgttatccggcccaactgccttgccattactcatccttttcaatgcttttttcaccttgtgctcttgaattcgacgataatagttatagtt |
215 |
Q |
| |
|
| ||||||| || ||| ||| |||||||||||||||| |||||||||||||| ||| ||| ||| |||||||| | |||||| |||||| |||| |
|
|
| T |
26821 |
agtcagtatgttgtctggcttaaccgccttgccattactcacccttttcaatgcttcttttaccccgtgttcttgaatccaacgatagtagttaaagtt |
26723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 95; Significance: 1e-46; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 17 - 229
Target Start/End: Original strand, 51449029 - 51449237
Alignment:
| Q |
17 |
ttcttctccactcgtctggcattttctttgtcctcataatctcgttgaannnnnnngtgagccacataattcctttatcgccaagacttttccacacttc |
116 |
Q |
| |
|
|||||||||||||||| ||||||||||| ||||||||||||| || |||||||||| ||| ||| ||||||||||||| ||||||||||| |
|
|
| T |
51449029 |
ttcttctccactcgtccggcattttcttcgtcctcataatcta----aaaaggtttgtgagccacacaatccctctatcgccaagactcttccacacttc |
51449124 |
T |
|
| Q |
117 |
gataggtatgttatccggcccaactgccttgccattactcatccttttcaatgcttttttcaccttgtgctcttgaattcgacgataatagttatagttc |
216 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||| |||||||||||| ||| |||| | | |||| |||||||||||| ||||||||||| |||||||| |
|
|
| T |
51449125 |
gataggtatgttgtccggcccaactgccttgccactactcatcctttccaacgcttctctaacctcgtgctcttgaatccgacgataataattatagttt |
51449224 |
T |
|
| Q |
217 |
cggccctgctctc |
229 |
Q |
| |
|
||| ||| ||||| |
|
|
| T |
51449225 |
cggtcctcctctc |
51449237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 25 - 215
Target Start/End: Complemental strand, 9258055 - 9257865
Alignment:
| Q |
25 |
cactcgtctggcattttctttgtcctcataatctcgttgaannnnnnngtgagccacataattcctttatcgccaagacttttccacacttcgataggta |
124 |
Q |
| |
|
|||||||| | ||||||||| ||||||| ||||||||| || |||| ||||| ||| ||| |||| |||||||||||||||| | ||| ||| |
|
|
| T |
9258055 |
cactcgtccgacattttcttcgtcctcacaatctcgttaaattttttggtgatccacacaatccctctatctccaagacttttccacataacaataagta |
9257956 |
T |
|
| Q |
125 |
tgttatccggcccaactgccttgccattactcatccttttcaatgcttttttcaccttgtgctcttgaattcgacgataatagttatagtt |
215 |
Q |
| |
|
|||| || |||||||||||||||||||||||||||||||||||||||| || || |||||||||||||| |||||||||| ||||||||| |
|
|
| T |
9257955 |
tgttgtctggcccaactgccttgccattactcatccttttcaatgcttcctttactttgtgctcttgaatccgacgataatcgttatagtt |
9257865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 112 - 229
Target Start/End: Complemental strand, 38848936 - 38848819
Alignment:
| Q |
112 |
acttcgataggtatgttatccggcccaactgccttgccattactcatccttttcaatgcttttttcaccttgtgctcttgaattcgacgataatagttat |
211 |
Q |
| |
|
||||||||||||||||| ||||||||||||| ||||||| |||||||||||||||| |||| | | |||| |||||||||||| |||||||| ||||||| |
|
|
| T |
38848936 |
acttcgataggtatgttgtccggcccaactgacttgccactactcatccttttcaacgcttctctaacctcgtgctcttgaatccgacgatagtagttat |
38848837 |
T |
|
| Q |
212 |
agttccggccctgctctc |
229 |
Q |
| |
|
|||| ||| ||| ||||| |
|
|
| T |
38848836 |
agtttcggtcctcctctc |
38848819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 37 - 215
Target Start/End: Complemental strand, 3368705 - 3368527
Alignment:
| Q |
37 |
attttctttgtcctcataatctcgttgaannnnnnngtgagccacataattcctttatcgccaagacttttccacacttcgataggtatgttatccggcc |
136 |
Q |
| |
|
|||||||||||||| ||||||||||| || |||||||||| ||||||| || | |||| |||||| | ||||| || |||||||| || ||| |
|
|
| T |
3368705 |
attttctttgtccttataatctcgtttaaaagttcggtgagccacacaattcctctacctccaatacttttatatacttcaattggtatgttgtctggct |
3368606 |
T |
|
| Q |
137 |
caactgccttgccattactcatccttttcaatgcttttttcaccttgtgctcttgaattcgacgataatagttatagtt |
215 |
Q |
| |
|
|||| ||||||||||||||||||||| ||| || ||| | ||||| |||||||| |||||||||||||||||||| |
|
|
| T |
3368605 |
caacatccttgccattactcatcctttccaacatttattttgctttgtgttcttgaatccgacgataatagttatagtt |
3368527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 105 - 167
Target Start/End: Complemental strand, 27916458 - 27916396
Alignment:
| Q |
105 |
tttccacacttcgataggtatgttatccggcccaactgccttgccattactcatccttttcaa |
167 |
Q |
| |
|
|||||||||||| ||||||||||| || | |||||||||||| ||||||||||||| |||||| |
|
|
| T |
27916458 |
tttccacacttcaataggtatgttgtctgccccaactgccttcccattactcatccatttcaa |
27916396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 128
Target Start/End: Complemental strand, 48252542 - 48252502
Alignment:
| Q |
88 |
cctttatcgccaagacttttccacacttcgataggtatgtt |
128 |
Q |
| |
|
|||||||| ||||||| |||||||||||| ||||||||||| |
|
|
| T |
48252542 |
cctttatctccaagacctttccacacttcaataggtatgtt |
48252502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0113 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: scaffold0113
Description:
Target: scaffold0113; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 20 - 165
Target Start/End: Original strand, 13580 - 13725
Alignment:
| Q |
20 |
ttctccactcgtctggcattttctttgtcctcataatctcgttgaannnnnnngtgagccacataattcctttatcgccaagacttttccacacttcgat |
119 |
Q |
| |
|
||||||||||||| | ||||||||| ||||||||||||||||| || |||||||||| |||| || ||||||||||||| |||||||||| ||| |
|
|
| T |
13580 |
ttctccactcgtccgacattttcttcgtcctcataatctcgttaaaaaatattgtgagccacacaatttctctatcgccaagactcttccacactttgat |
13679 |
T |
|
| Q |
120 |
aggtatgttatccggcccaactgccttgccattactcatccttttc |
165 |
Q |
| |
|
| | ||||| | | ||||||||| |||| || |||||||||||||| |
|
|
| T |
13680 |
aagcatgttgttcagcccaactgtcttgtcactactcatccttttc |
13725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 119 - 229
Target Start/End: Original strand, 74757 - 74867
Alignment:
| Q |
119 |
taggtatgttatccggcccaactgccttgccattactcatccttttcaatgcttttttcaccttgtgctcttgaattcgacgataatagttatagttccg |
218 |
Q |
| |
|
|||||||||| || | |||||||| |||||||||||||||||||||||| ||| ||| ||||||||||||||||| ||||||| ||||| ||||| || |
|
|
| T |
74757 |
taggtatgttgtctgacccaactgtcttgccattactcatccttttcaacacttcttttaccttgtgctcttgaatctgacgatagtagttttagtttcg |
74856 |
T |
|
| Q |
219 |
gccctgctctc |
229 |
Q |
| |
|
| ||| ||||| |
|
|
| T |
74857 |
gtcctcctctc |
74867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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