View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11142_high_8 (Length: 538)
Name: NF11142_high_8
Description: NF11142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11142_high_8 |
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Alignment Details
Target: chr1 (Bit Score: 411; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 6 - 523
Target Start/End: Original strand, 26093831 - 26094350
Alignment:
| Q |
6 |
tatcgtatcagacatcaaacacgtttttatatgaagtgtcggtgttacatggttaatcaggtagccataatttttctttggagggaaaagtcttttcaat |
105 |
Q |
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| T |
26093831 |
tatcgcattagacatcaaacatgtttttatataaagtgtcggtgttacatagttaatcagataagcacaatttttctttagaaggaaaagtcttttcaat |
26093930 |
T |
|
| Q |
106 |
tcaagttaattttcattttttaactgatttgttagttgatgaaattacataccccaatactgtattggtgattaacaagtgtggcatttgtaggaaggta |
205 |
Q |
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||||||||||||| ||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
26093931 |
tcaagttaatttttatttt-taactgatttgttagttgatgaaaatacataccccaatactgtattggtggttaacaagtgtggcatttgtaggaaggta |
26094029 |
T |
|
| Q |
206 |
gtttctgtctaaggatttcaatacattgttcacaacaatatttgtcattgcaagatccactggaccctgtgctttcccatttgagcatgctgcgaatgat |
305 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
26094030 |
gtttctgtctaaggatttcaatacattgttcacaacaatatttgtcattgcaagatccactggactctgtgctttcccatttgagcatgctgcgaatgat |
26094129 |
T |
|
| Q |
306 |
tgttttagtgttccccatttcagaggaccatttggtccaatataactaaaattaaccgaatctagcataaaaattag---nnnnnnnncctcagtcataa |
402 |
Q |
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| T |
26094130 |
tgttttagtgttccccatttcagaggaccatttggtccaatataactaaaattaaccgaatctagcataaaaattagaaaaaaaaaaacctcagtcataa |
26094229 |
T |
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| Q |
403 |
caaattatcagcatatcataacatgtaatttagtcttcacagattaagaaaaacaataatactcagttgtagaatgaaggaatgagaaaaatgtagcact |
502 |
Q |
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| T |
26094230 |
aaaattatcagcatatcataacatgtaatttagtcttcacagattaagaaaaacaataatactcagttgtagaatgaaggaatgagaaaaatgtagcact |
26094329 |
T |
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| Q |
503 |
gaattaattttttgatattaa |
523 |
Q |
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| T |
26094330 |
gaattaattttttgatattaa |
26094350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 1 - 287
Target Start/End: Original strand, 26074184 - 26074470
Alignment:
| Q |
1 |
acaattatcgtatcagacatcaaacacgtttttatatgaagtgtcggtgttacatggttaatcaggtagccataatttttctttggagggaaaagtcttt |
100 |
Q |
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||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
26074184 |
acaattatcgtatcaaacatcaaacacgttttcatatgaagtgtcggtgttacatggttaatcaggtagccataatttttctttggaaggaaaagtcttt |
26074283 |
T |
|
| Q |
101 |
tcaattcaagttaattttcattttttaactgatttgttagttgatgaaattacataccccaatactgtattggtgattaacaagtgtggcatttgtagga |
200 |
Q |
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| T |
26074284 |
ttaattcaagttaatttttattttttaactgatttgttagttgatgaaaatacataccccaatactgtattggtgattaacaagtgtggcatttgtagga |
26074383 |
T |
|
| Q |
201 |
aggtagtttctgtctaaggatttcaatacattgttcacaacaatatttgtcattgcaagatccactggaccctgtgctttcccattt |
287 |
Q |
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| T |
26074384 |
aggtagtttctgtctaaggatttcatatcctggttcatgacaacatctgttattacaagatccactggactctatgctttcccattt |
26074470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 122 - 378
Target Start/End: Original strand, 26105377 - 26105634
Alignment:
| Q |
122 |
tttttaactgatttgt-tagttgatgaaattacataccccaatactgtattggtgattaacaagtgtggcatttgtaggaaggtagtttctgtctaagga |
220 |
Q |
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| T |
26105377 |
tttttaagagatttgtatagttgatgaacatacataccccaatgttgaattggttgttaacaagtgtagcatttgtgggaaggtagtttctgtctaagga |
26105476 |
T |
|
| Q |
221 |
tttcaatacattgttcacaacaatatttgtcattgcaagatccactggaccctgtgctttcccatttgagcatgctgcgaatgattgttttagtgttccc |
320 |
Q |
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| T |
26105477 |
tttcaattcctggttcatgacaatatctgtcattacaagatccactggactttgtgctttcccatttgaacatgccgcgaaagatggactcagagttccc |
26105576 |
T |
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| Q |
321 |
catttcagaggaccatttggtccaatataactaaaattaaccgaatctagcataaaaa |
378 |
Q |
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|| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26105577 |
cacttctcaggaccatttggtccaatataactaaaattaaccgaatctagcataaaaa |
26105634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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