View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11142_low_1 (Length: 828)
Name: NF11142_low_1
Description: NF11142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11142_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 685; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 685; E-Value: 0
Query Start/End: Original strand, 16 - 814
Target Start/End: Original strand, 40092895 - 40093692
Alignment:
| Q |
16 |
cctgtgttattgaaactcaaatgaagttgaggttgattttaaaacaagttaaaacatgagttgatcgttgannnnnnnnnnnnnnnnnnnggagggagag |
115 |
Q |
| |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| |||||||| |
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| T |
40092895 |
cctgtgttattgaaactcaaatgaagtcgaggttgattttaaaacaagttaaaacatgagttgatcattgatttttttttttatttttttt-agggagag |
40092993 |
T |
|
| Q |
116 |
ttgatgatggatgttccttttaaaaatgttcataatttattgtttcaattaagttcttgaattattaaataataactttctatgatattattgatgaatt |
215 |
Q |
| |
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||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40092994 |
ttgatgatggatgttccttctaaaaatgttcataatttattttttcaattaagttcttgaattattaaataataactttctatgatattattgatgaatt |
40093093 |
T |
|
| Q |
216 |
cttagggagtcaaaccgggaacaaagaaaaacctaagcttaatgaggacatcccgatcacagttctttctggaaagaataaaattgatctgttgagttta |
315 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
40093094 |
cttagggagtcaaaccgggaacaaagaaaaacctaagcttaatgaggacatcccgatcacagttctttctggaaagaataaaattgatctgctgagttta |
40093193 |
T |
|
| Q |
316 |
acagttggacttcaggttcagcttttcttgtttttagtttccaattatgcatagaattgcttgctcccccaatgatttctctcattactatatctaacat |
415 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40093194 |
acagttggacttcaggttcagcttttcttgtttttagtttccaattatgcatagaattgcttgctcccccaatgatttctctcattactatatctaacat |
40093293 |
T |
|
| Q |
416 |
gaaccatatacacatcagaactatggagcnnnnnnngacacatggggagcggggatcaccggtccagtgatattgaaaggtttgaagaatggcaacaaga |
515 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40093294 |
gaaccatatacacatcagaactatggagctttttttgacacatggggagcggggatcaccggtccagtgatattgaaaggtttgaagaatggcaacaaga |
40093393 |
T |
|
| Q |
516 |
ctcttgatctctcctctcggaagtggacatatcaggtcagtcttcacttttgatcgaagactatttattagtcttacatagttaatggagttaattcttt |
615 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
40093394 |
ctcttgatctctcctctcggaagtggacatatcaggtcagtcttcacttttgatcgaagactatttgttagtcttacatagttaatggagttaattcttt |
40093493 |
T |
|
| Q |
616 |
tgatacaggttggcctaaaaggtgaagatttaggtctctctagtggaagttccggagcgtggaattcaaagactactttccctaagaaacaaccattgat |
715 |
Q |
| |
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| T |
40093494 |
tgatacaggttggcctaaaaggtgaagatttaggtctctctagtggaagttccggagcgtggaattcaaagactactttccctaagaaacaaccattgat |
40093593 |
T |
|
| Q |
716 |
ttggtacaaggtaatttaattttcaatttattgtttcccttgatataagttatggaatttcaaattaaaagaacgccactatatgaaaaatgttttttg |
814 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40093594 |
ttggtacaaggtaatttaattttcaatttattgtttcccttgatataagttatggaatttcaaattaaaagaacgccactatatgaaaaatgttttttg |
40093692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 108 - 814
Target Start/End: Original strand, 40062329 - 40063061
Alignment:
| Q |
108 |
agggagagttgatgatggatgttccttttaaaaatgttcataatttattgtttcaattaagttcttgaattattaaataataactttctatgatattatt |
207 |
Q |
| |
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||||||||||||| |||||||||| | ||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| ||||||||||| |
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| T |
40062329 |
agggagagttgatcttggatgttccgtccaaaaatgttcataatttattgtttccattaagttcttgaattattaaattataactttcgatgatattatt |
40062428 |
T |
|
| Q |
208 |
gatgaattcttagggagtcaaaccgggaacaaagaaaaacctaagcttaatgaggacatcccgatcacagttctttctggaaagaataaaattgatctgt |
307 |
Q |
| |
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|||||||||||||||||||| |||||||||||||| |||||||||||||||| ||||||||| |||| ||| ||| |||||| || ||||||||||| |
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| T |
40062429 |
gatgaattcttagggagtcacaccgggaacaaagacaaacctaagcttaatgtggacatcccaatcaaagtaatttatggaaataaccaaattgatctgc |
40062528 |
T |
|
| Q |
308 |
tgagtttaacagttggacttcaggttcagcttttcttgtttttagtttccaattatgcatagaattgcttgctcccccaatgatttctctcattactata |
407 |
Q |
| |
|
||||| ||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||| ||||||||| |||| ||||||||||||||||||| |
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| T |
40062529 |
tgagtctaacagttggacttcaggttcagattttcgtgtttgtagtttccaattatgcatagaatggcttgctcctccaaagatttctctcattactata |
40062628 |
T |
|
| Q |
408 |
t-----ctaacatgaaccatatacacatcagaactatggagcnnnnnnngacacatggggagcggggatcaccggtccagtgatattgaaaggtttgaag |
502 |
Q |
| |
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| |||||||||||||||| ||||||||||||||||||| |||| ||||||||||||||||||||||||||| | |||||||||||||||| |
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|
| T |
40062629 |
tctaagctaacatgaaccatatgcacatcagaactatggagctttttttgacagatggggagcggggatcaccggtccagtaacattgaaaggtttgaag |
40062728 |
T |
|
| Q |
503 |
aatggcaacaagactcttgatctctcctctcggaagtggacatatcaggtcagtcttcactt------------ttgatcgaagactatttattagtctt |
590 |
Q |
| |
|
||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| |||| |||||| ||||||||||||||||||| |
|
|
| T |
40062729 |
aatggcaacaacactcttgatctctcctctcagaagtggacatatcaggtcagtcttaacttttgatcaaagacttgatcaaagactatttattagtctt |
40062828 |
T |
|
| Q |
591 |
a---------catagttaatggagttaattcttttgatacaggttggcctaaaaggtgaagatttaggtctctctagtggaagttccggagcgtggaatt |
681 |
Q |
| |
|
| || |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || ||||||||||||| || ||||| | |
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| T |
40062829 |
aatggagattgattgttaatggagttaattctattgatacaggttggcctaaaaggtgaagatttaggtctgtccagtggaagttccgaaggttggaact |
40062928 |
T |
|
| Q |
682 |
caaagactactttccctaagaaacaaccattgatttggtacaaggtaatttaattttcaatttattgtttcccttgatataagttatggaatttcaaatt |
781 |
Q |
| |
|
|| || |||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
40062929 |
cacagtctactttccctaagaatcaaccattgatttggtacaaggtaattttattttcaatttattgtttccctttatataagttatggaatttcaaatt |
40063028 |
T |
|
| Q |
782 |
aaaagaacgccactatatgaaaaatgttttttg |
814 |
Q |
| |
|
||||||| ||||||||||||||||||||||||| |
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| T |
40063029 |
aaaagaatgccactatatgaaaaatgttttttg |
40063061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 363 - 813
Target Start/End: Original strand, 40080933 - 40081410
Alignment:
| Q |
363 |
tgcatagaattgcttgctcccccaatgatttctctcattactatatctaac-----atgaaccatatacacatcagaactatggagcnnnnnnngacaca |
457 |
Q |
| |
|
|||||||| | ||||||||| || ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| |
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|
| T |
40080933 |
tgcatagactggcttgctccttcagtgatttctctcattactatatctaagctaatatgaaccatatacacatcagaactatggagccttttttgacaca |
40081032 |
T |
|
| Q |
458 |
tggggagcggggatcaccggtccagtgatattgaaaggtttgaagaatggcaacaagactcttgatctctcctctcggaagtggacatatcaggtcagtc |
557 |
Q |
| |
|
|||||| |||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| || |
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|
| T |
40081033 |
gtgggagcagggatcaccggtcccgtgatattgaaaggtttgaagaatggcaacaacactcttgatctctcctctcggaagtggacatatcaggtcaatc |
40081132 |
T |
|
| Q |
558 |
ttcactttt-gatcgaagactatttattagtctt---------------------acatagttaatggagttaattcttttgatacaggttggcctaaaa |
635 |
Q |
| |
|
|| | |||| ||||||| ||||||||||| |||| |||| |||||||||||||||| ||| ||||||| ||||||||||| |
|
|
| T |
40081133 |
ttaaatttttgatcgaaaactatttattattctttctttatcactttaatggaatacattgttaatggagttaattttttcgatacagattggcctaaaa |
40081232 |
T |
|
| Q |
636 |
ggtgaagatttaggtctctctagtggaagttccggagcgtggaattcaaagactactttccctaagaaacaaccattgatttggtacaaggtaatttaat |
735 |
Q |
| |
|
|| |||||||||||||| |||||||||||||| |||| |||||||||| || |||||| ||||||||| ||||||||| |||||||||||||| ||| || |
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|
| T |
40081233 |
ggcgaagatttaggtctgtctagtggaagttctggagggtggaattcacagtctacttaccctaagaaccaaccattggtttggtacaaggtagttttat |
40081332 |
T |
|
| Q |
736 |
tttcaatttattgtttcccttgatataagttatggaatttcaaattaaaagaacgccactatatgaaaaatgtttttt |
813 |
Q |
| |
|
|||||||||||||||||||||||||||||| | ||||||||||||||| || |||||||||||||||||||||||| |
|
|
| T |
40081333 |
tttcaatttattgtttcccttgatataagtaagggaatttcaaattaaggaaatgccactatatgaaaaatgtttttt |
40081410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 248 - 367
Target Start/End: Original strand, 40080793 - 40080912
Alignment:
| Q |
248 |
ctaagcttaatgaggacatcccgatcacagttctttctggaaagaataaaattgatctgttgagtttaacagttggacttcaggttcagcttttcttgtt |
347 |
Q |
| |
|
|||||||||||| ||||||||| ||| || | |||| |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
40080793 |
ctaagcttaatgtggacatcccaatcgcactagtttccggaaagaacaaaattgatctactgagtttaacagttggacttcaggttcagcttttcttgtt |
40080892 |
T |
|
| Q |
348 |
tttagtttccaattatgcat |
367 |
Q |
| |
|
||||||||| || ||||||| |
|
|
| T |
40080893 |
tttagtttctaaatatgcat |
40080912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 16 - 81
Target Start/End: Original strand, 40062245 - 40062311
Alignment:
| Q |
16 |
cctgtgttattgaaactcaaatgaagttgaggttgattttaaaacaagtt-aaaacatgagttgatc |
81 |
Q |
| |
|
||||| ||||||||||||||||||||| ||||||||||||||||||||| |||| ||||||||||| |
|
|
| T |
40062245 |
cctgtattattgaaactcaaatgaagtcaaggttgattttaaaacaagttaaaaatatgagttgatc |
40062311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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