View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11142_low_14 (Length: 501)

Name: NF11142_low_14
Description: NF11142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11142_low_14
NF11142_low_14
[»] chr3 (15 HSPs)
chr3 (90-386)||(9358748-9359044)
chr3 (99-227)||(47820896-47821026)
chr3 (96-226)||(28934741-28934868)
chr3 (90-226)||(31525363-31525496)
chr3 (97-220)||(28956951-28957074)
chr3 (90-152)||(52076136-52076198)
chr3 (95-150)||(10454357-10454412)
chr3 (96-232)||(20701139-20701275)
chr3 (90-151)||(43073045-43073106)
chr3 (95-152)||(44656229-44656286)
chr3 (103-226)||(53349401-53349523)
chr3 (166-226)||(55166896-55166955)
chr3 (95-151)||(8431422-8431478)
chr3 (166-226)||(8431491-8431549)
chr3 (166-226)||(43073120-43073178)
[»] chr1 (14 HSPs)
chr1 (127-265)||(43268640-43268778)
chr1 (97-386)||(43460533-43460831)
chr1 (90-237)||(19472786-19472933)
chr1 (90-226)||(12172954-12173087)
chr1 (98-235)||(8462976-8463113)
chr1 (90-226)||(26990601-26990734)
chr1 (90-150)||(38548750-38548810)
chr1 (99-226)||(42442015-42442142)
chr1 (90-140)||(28447802-28447852)
chr1 (166-219)||(47028937-47028990)
chr1 (90-149)||(31833965-31834024)
chr1 (104-151)||(46757378-46757425)
chr1 (98-151)||(26385035-26385087)
chr1 (166-227)||(41955963-41956024)
[»] chr8 (13 HSPs)
chr8 (90-274)||(30836127-30836320)
chr8 (4-73)||(31943953-31944022)
chr8 (90-226)||(22839250-22839387)
chr8 (96-220)||(38086419-38086544)
chr8 (95-151)||(40930834-40930890)
chr8 (95-219)||(5200486-5200609)
chr8 (95-226)||(24200626-24200753)
chr8 (99-151)||(25829272-25829324)
chr8 (95-151)||(13959223-13959279)
chr8 (95-143)||(584139-584187)
chr8 (161-226)||(10124859-10124925)
chr8 (95-125)||(7845138-7845168)
chr8 (102-151)||(44362940-44362989)
[»] chr4 (9 HSPs)
chr4 (96-366)||(16662312-16662584)
chr4 (95-220)||(32183282-32183409)
chr4 (95-220)||(16572074-16572198)
chr4 (90-232)||(25641268-25641413)
chr4 (90-151)||(15186980-15187041)
chr4 (90-149)||(47571570-47571629)
chr4 (90-152)||(42390771-42390833)
chr4 (96-130)||(45511407-45511441)
chr4 (173-225)||(42390855-42390906)
[»] chr7 (15 HSPs)
chr7 (95-226)||(30655602-30655734)
chr7 (90-226)||(46691844-46691981)
chr7 (100-237)||(49035862-49036001)
chr7 (95-220)||(31424776-31424902)
chr7 (97-219)||(41702870-41702992)
chr7 (95-151)||(1039067-1039123)
chr7 (99-225)||(33320704-33320825)
chr7 (96-151)||(36615808-36615863)
chr7 (95-152)||(42598057-42598114)
chr7 (99-145)||(32679023-32679069)
chr7 (98-151)||(19471096-19471149)
chr7 (98-151)||(22197744-22197797)
chr7 (98-151)||(22240024-22240077)
chr7 (166-226)||(22197668-22197727)
chr7 (166-226)||(22240094-22240153)
[»] chr5 (11 HSPs)
chr5 (99-237)||(23172981-23173118)
chr5 (98-226)||(10431056-10431185)
chr5 (97-150)||(22887284-22887337)
chr5 (96-226)||(819134-819261)
chr5 (90-141)||(9597753-9597804)
chr5 (99-150)||(9931804-9931855)
chr5 (97-149)||(25539896-25539947)
chr5 (96-151)||(3677795-3677849)
chr5 (165-226)||(2292161-2292223)
chr5 (167-232)||(9931877-9931941)
chr5 (95-146)||(42241593-42241644)
[»] chr2 (5 HSPs)
chr2 (95-227)||(41419616-41419748)
chr2 (94-227)||(14732343-14732474)
chr2 (104-226)||(41378216-41378332)
chr2 (95-220)||(22649069-22649194)
chr2 (95-149)||(38908743-38908797)
[»] chr6 (9 HSPs)
chr6 (90-220)||(15859100-15859234)
chr6 (98-226)||(10246910-10247035)
chr6 (95-226)||(11546765-11546895)
chr6 (99-226)||(34761160-34761287)
chr6 (90-151)||(6575797-6575858)
chr6 (98-152)||(33984833-33984887)
chr6 (90-226)||(33112714-33112851)
chr6 (95-141)||(14459932-14459978)
chr6 (166-232)||(33984747-33984813)
[»] scaffold0209 (1 HSPs)
scaffold0209 (95-143)||(12899-12947)


Alignment Details
Target: chr3 (Bit Score: 196; Significance: 1e-106; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 90 - 386
Target Start/End: Original strand, 9358748 - 9359044
Alignment:
Q  90 gaataggcaaaatattattaaccaacaagcccgtgcgagaagcactaataagctcgggtggagnnnnnnnncaaagaaggggaaatcggttgccgcacaa 189  Q
    |||| ||||||||||||||| ||||||||||||||||||||| ||||||||||| ||||||||        || ||||||||||||||||||||||||||    
T  9358748 gaatcggcaaaatattattacccaacaagcccgtgcgagaagtactaataagcttgggtggagaaaaaaa-catagaaggggaaatcggttgccgcacaa 9358846  T
Q  190 acaccgactccaacaaaaacccctttaaaaaccacccacaaaccaaggtgccgcctataaacgtaacactgtaaacaccaggaaagcacccaaaacnnnn 289  Q
    |||||| ||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||        
T  9358847 acaccggctcgaacaaaaacccctttaaaaaccacccacaaaccaagatgccgcctataaacgtaacaccgtaaacaccaggaaagcacccaaaaccaaa 9358946  T
Q  290 nnnggca-caagcaatgaggctgaagtatactatcaagaagctagcatactcctacctcacaaccatccgagccaaaaccaataaaacagcaggtccc 386  Q
       |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||    
T  9358947 aaaggcaccaagcaatgaggctgaagtatactatcaagaagctagcatactcctacctcacaaccagccgagccaaaaccactaaaacagcaggtccc 9359044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 99 - 227
Target Start/End: Complemental strand, 47821026 - 47820896
Alignment:
Q  99 aaatattattaaccaacaagcccgtgcgagaagcactaataagctcgggtggagnnnnnnnn--caaagaaggggaaatcggttgccgcacaaacaccga 196  Q
    ||||||||||||||||||||||||||| ||| ||||||||||||||||||||||          |||||||||||||||||||||||||||||||||||     
T  47821026 aaatattattaaccaacaagcccgtgcaagacgcactaataagctcgggtggaggaaaaaaatacaaagaaggggaaatcggttgccgcacaaacaccgg 47820927  T
Q  197 ctccaacaaaaacccctttaaaaaccaccca 227  Q
    ||| |||||||||||||||||||||||||||    
T  47820926 ctcgaacaaaaacccctttaaaaaccaccca 47820896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 96 - 226
Target Start/End: Original strand, 28934741 - 28934868
Alignment:
Q  96 gcaaaatattattaaccaacaagcccgtgcgagaagcactaataagctcgggtggagnnnnnnnncaaagaaggggaaatcggttgccgcacaaacaccg 195  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||         ||| |||||||||||||||||  |||||||||||    
T  28934741 gcaaaatattattaaccaacaagcccgtgcaagaagcactaataagctcgggtggagaaaaaaca-aaacaaggggaaatcggttgc--cacaaacaccg 28934837  T
Q  196 actccaacaaaaacccctttaaaaaccaccc 226  Q
     ||| |||||||||||||| |||||||||||    
T  28934838 gctcgaacaaaaaccccttaaaaaaccaccc 28934868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 90 - 226
Target Start/End: Complemental strand, 31525496 - 31525363
Alignment:
Q  90 gaataggcaaaatattattaaccaacaagcccgtgcgagaagcactaataagctcgggtggagnnnnnnnncaaagaaggggaaatcggttgccgcacaa 189  Q
    |||| |||||||||||||||||||||||||| |||| ||||||||||||||||| |||||||         |||| |||||||||||||||||| |||||    
T  31525496 gaatcggcaaaatattattaaccaacaagcctgtgcaagaagcactaataagcttgggtgga--aaaaaaacaaacaaggggaaatcggttgccacacaa 31525399  T
Q  190 acaccgactccaacaaaaacccctttaaaaaccaccc 226  Q
    ||| || ||| |||||||||||| |||||||||||||    
T  31525398 acaacggctcgaacaaaaacccc-ttaaaaaccaccc 31525363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 97 - 220
Target Start/End: Complemental strand, 28957074 - 28956951
Alignment:
Q  97 caaaatattattaaccaacaagcccgtgcgagaagcactaataagctcgggtggagnnnnnnnncaaagaaggggaaatcggttgccgcacaaacaccga 196  Q
    |||||||||||||||||||||| |||||| |||| |||| |||||||||||||           ||||||||||||||||||||||| |||||||||||     
T  28957074 caaaatattattaaccaacaagtccgtgcaagaaacactgataagctcgggtgagaaaaaaaaacaaagaaggggaaatcggttgccacacaaacaccgg 28956975  T
Q  197 ctccaacaaaaacccctttaaaaa 220  Q
    ||| ||||||||||||||||||||    
T  28956974 ctcgaacaaaaacccctttaaaaa 28956951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 90 - 152
Target Start/End: Complemental strand, 52076198 - 52076136
Alignment:
Q  90 gaataggcaaaatattattaaccaacaagcccgtgcgagaagcactaataagctcgggtggag 152  Q
    |||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  52076198 gaatcggcaaaatattactaaccaacaagcccgtgcgagaagcactaataagctcgggtggag 52076136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 95 - 150
Target Start/End: Complemental strand, 10454412 - 10454357
Alignment:
Q  95 ggcaaaatattattaaccaacaagcccgtgcgagaagcactaataagctcgggtgg 150  Q
    ||||||||||||||||||||||||||||||| || |||||||||||||||||||||    
T  10454412 ggcaaaatattattaaccaacaagcccgtgcaaggagcactaataagctcgggtgg 10454357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 96 - 232
Target Start/End: Complemental strand, 20701275 - 20701139
Alignment:
Q  96 gcaaaatattattaaccaacaagcccgtgcgagaagcactaataagctcgggtggag-nnnnnnnncaaagaaggggaaatcggttgccgcacaaacacc 194  Q
    |||||||||||||||||||| ||||||| | ||||||||||||||||||||||| ||         |||| |||||||||||| ||||| ||| |||  |    
T  20701275 gcaaaatattattaaccaacgagcccgtacaagaagcactaataagctcgggtgaagaaaaaaatacaaacaaggggaaatcgattgccacac-aactac 20701177  T
Q  195 gactccaacaaaaacccctttaaaaaccacccacaaac 232  Q
    | ||| |||||||||||||| |||||||||||| ||||    
T  20701176 ggctcgaacaaaaaccccttaaaaaaccacccaaaaac 20701139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 90 - 151
Target Start/End: Original strand, 43073045 - 43073106
Alignment:
Q  90 gaataggcaaaatattattaaccaacaagcccgtgcgagaagcactaataagctcgggtgga 151  Q
    |||| ||||||||||||||||||||||||||||||| ||| ||||||||||||| |||||||    
T  43073045 gaatcggcaaaatattattaaccaacaagcccgtgcaagatgcactaataagcttgggtgga 43073106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 95 - 152
Target Start/End: Original strand, 44656229 - 44656286
Alignment:
Q  95 ggcaaaatattattaaccaacaagcccgtgcgagaagcactaataagctcgggtggag 152  Q
    ||||||||||||||||||||||||||||||| ||| |||| |||||||||||||||||    
T  44656229 ggcaaaatattattaaccaacaagcccgtgcaagatgcacaaataagctcgggtggag 44656286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 103 - 226
Target Start/End: Complemental strand, 53349523 - 53349401
Alignment:
Q  103 attattaaccaacaagcccgtgcgagaagcactaataagctcgggtggagnnnnnnnncaaagaaggggaaatcggttgccgcacaaacaccgactccaa 202  Q
    ||||||||||||||||| | ||| |||||||||||||| || ||||||          || | ||||| |||||||||||||||||||||||| ||| ||    
T  53349523 attattaaccaacaagctcatgcaagaagcactaataaacttgggtgggaaaattaaacatacaagggaaaatcggttgccgcacaaacaccggctcaaa 53349424  T
Q  203 caaaaacccctttaaaaaccaccc 226  Q
    |||||||||| |||||||||||||    
T  53349423 caaaaacccc-ttaaaaaccaccc 53349401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 166 - 226
Target Start/End: Original strand, 55166896 - 55166955
Alignment:
Q  166 aaggggaaatcggttgccgcacaaacaccgactccaacaaaaacccctttaaaaaccaccc 226  Q
    ||||||||||||||||||||||||||   | ||| |||||||||||| |||||||||||||    
T  55166896 aaggggaaatcggttgccgcacaaactttggctcgaacaaaaacccc-ttaaaaaccaccc 55166955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 95 - 151
Target Start/End: Original strand, 8431422 - 8431478
Alignment:
Q  95 ggcaaaatattattaaccaacaagcccgtgcgagaagcactaataagctcgggtgga 151  Q
    |||||||||||||| | ||| |||||||||| ||| ||||||| |||||||| ||||    
T  8431422 ggcaaaatattattgatcaagaagcccgtgcaagatgcactaacaagctcggatgga 8431478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 166 - 226
Target Start/End: Original strand, 8431491 - 8431549
Alignment:
Q  166 aaggggaaatcggttgccgcacaaacaccgactccaacaaaaacccctttaaaaaccaccc 226  Q
    |||||||||||||||||  || |||||||| ||| |||||||||||| |||||||||||||    
T  8431491 aaggggaaatcggttgcaaca-aaacaccggctcgaacaaaaacccc-ttaaaaaccaccc 8431549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 166 - 226
Target Start/End: Original strand, 43073120 - 43073178
Alignment:
Q  166 aaggggaaatcggttgccgcacaaacaccgactccaacaaaaacccctttaaaaaccaccc 226  Q
    ||||||||||||||||||  | |||||||| ||| |||||||||||| |||||||||||||    
T  43073120 aaggggaaatcggttgcctta-aaacaccggctcgaacaaaaacccc-ttaaaaaccaccc 43073178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 95; Significance: 3e-46; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 127 - 265
Target Start/End: Original strand, 43268640 - 43268778
Alignment:
Q  127 agaagcactaataagctcgggtggagnnnnnnnncaaagaaggggaaatcggttgccgcacaaacaccgactccaacaaaaacccctttaaaaaccaccc 226  Q
    |||| |||||||||||||||||||||        ||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||    
T  43268640 agaaacactaataagctcgggtggagaaaaaaaacaaagaaggggaaatcggttgccgcacaaacaccggctcgaacaaaaacccctttaaaaaccaccc 43268739  T
Q  227 acaaaccaaggtgccgcctataaacgtaacactgtaaac 265  Q
    |||||| ||||||||| ||||||||||||||||||||||    
T  43268740 acaaacaaaggtgccgtctataaacgtaacactgtaaac 43268778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 97 - 386
Target Start/End: Complemental strand, 43460831 - 43460533
Alignment:
Q  97 caaaatattattaaccaacaagcccgtgcgagaagcactaataagctcgggtg----gagnnnnnnnncaaagaaggggaaatcggttgccgcacaaa-c 191  Q
    |||||||||||||||||||||| | ||||||||||||||||||||||  ||||    ||         | ||||||||||||||||||||   ||||| |    
T  43460831 caaaatattattaaccaacaagtctgtgcgagaagcactaataagctaaggtgaaaagaaaaaaaaaactaagaaggggaaatcggttgcgatacaaaac 43460732  T
Q  192 accgactccaacaaaaacccctttaaaaaccacccacaaaccaaggtgccgcctataaa-cgtaacactgtaaa--caccaggaaagcacccaaaacnnn 288  Q
    || ||||| |||||||||||||| ||||||||||  ||||| ||||||||||||| ||| ||||||||   |||  |||||||||||||||||||||       
T  43460731 actgactcgaacaaaaaccccttcaaaaaccaccttcaaacaaaggtgccgcctaaaaaacgtaacacacaaaaaacaccaggaaagcacccaaaaccaa 43460632  T
Q  289 nnnnggcac-aagcaatgaggctgaagtatactatcaagaagctagcatactcctacctcacaaccatccgagccaaaaccaataaaacagcaggtccc 386  Q
        | ||| ||||||||||||||||||||||||||| |||  ||||||||||| ||||||| |||| ||||||||||| |  || |||||||||||||    
T  43460631 acgagacaccaagcaatgaggctgaagtatactatcatgaaagtagcatactcccacctcactaccagccgagccaaaagccctacaacagcaggtccc 43460533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 90 - 237
Target Start/End: Complemental strand, 19472933 - 19472786
Alignment:
Q  90 gaataggcaaaatattattaaccaacaagcccgtgcgagaagcactaataagctcgggtggagnnnnnnnncaaagaaggggaaatcggttgccgcacaa 189  Q
    |||| ||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||        |||||||||||||||| ||||||  ||||    
T  19472933 gaatcggcaaaatattattaaccaacaagcccgtgcaagacgcactaataagctcgggtggagaaaaaatacaaagaaggggaaatcagttgccatacaa 19472834  T
Q  190 acaccgactccaacaaaaacccctttaaaaaccacccacaaaccaagg 237  Q
    || ||| ||| |||||||| |||||||||||||||||| |||| ||||    
T  19472833 actccggctcgaacaaaaatccctttaaaaaccacccataaactaagg 19472786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 90 - 226
Target Start/End: Complemental strand, 12173087 - 12172954
Alignment:
Q  90 gaataggcaaaatattattaaccaacaagcccgtgcgagaagcactaataagctcgggtggagnnnnnnnncaaagaaggggaaatcggttgccgcacaa 189  Q
    |||| ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||         |||| |||||||||||||||||| |||||    
T  12173087 gaatcggcaaaatattattaaccaacaagcccgtgcaagaagcactaataagcttgggtgga--aaaaaaacaaacaaggggaaatcggttgccacacaa 12172990  T
Q  190 acaccgactccaacaaaaacccctttaaaaaccaccc 226  Q
    ||| |  ||| |||||||||||| |||||||||||||    
T  12172989 acatcagctcgaacaaaaacccc-ttaaaaaccaccc 12172954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 98 - 235
Target Start/End: Original strand, 8462976 - 8463113
Alignment:
Q  98 aaaatattattaaccaacaagcccgtgcgagaagcactaataagctcgggtggagnnnnnnnncaaagaaggggaaatcggttgccgcacaaacaccgac 197  Q
    |||||||||||||||||||||| ||||| |||||||||||| |||||||||||||        || | ||||| |||||||||||| || ||||  || |    
T  8462976 aaaatattattaaccaacaagctcgtgcaagaagcactaattagctcgggtggagaaaaaatacatacaagggaaaatcggttgccacaaaaacgtcggc 8463075  T
Q  198 tccaacaaaaacccctttaaaaaccacccacaaaccaa 235  Q
    || |||||||||||||| |||||||||||| |||||||    
T  8463076 tcgaacaaaaaccccttaaaaaaccacccaaaaaccaa 8463113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 90 - 226
Target Start/End: Complemental strand, 26990734 - 26990601
Alignment:
Q  90 gaataggcaaaatattattaaccaacaagcccgtgcgagaagcactaataagctcgggtggagnnnnnnnncaaagaaggggaaatcggttgccgcacaa 189  Q
    |||| |||||||||||||||||||| |||||||||| ||||||||||||||||| |||||||         || | ||||| |||||| |||||||||||    
T  26990734 gaatcggcaaaatattattaaccaataagcccgtgcaagaagcactaataagcttgggtgga--aaaaaaacatacaagggaaaatcgattgccgcacaa 26990637  T
Q  190 acaccgactccaacaaaaacccctttaaaaaccaccc 226  Q
     ||||| ||| |||||||| ||| |||||||||||||    
T  26990636 gcaccggctcaaacaaaaatccc-ttaaaaaccaccc 26990601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 90 - 150
Target Start/End: Complemental strand, 38548810 - 38548750
Alignment:
Q  90 gaataggcaaaatattattaaccaacaagcccgtgcgagaagcactaataagctcgggtgg 150  Q
    |||| ||||||||||||||||||||||| ||||||| ||| ||||||||||||||||||||    
T  38548810 gaatcggcaaaatattattaaccaacaaacccgtgcaagacgcactaataagctcgggtgg 38548750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 99 - 226
Target Start/End: Original strand, 42442015 - 42442142
Alignment:
Q  99 aaatattattaaccaacaagcccgtgcgagaagcactaataagctcgggtg-gagnnnnnnnncaaagaaggggaaatcggttgccgcacaaacaccgac 197  Q
    |||||||||||||||||||| |||||| |||||||||||||||||||||||  |         |||| || |||||||||||||||    ||||||||||    
T  42442015 aaatattattaaccaacaagtccgtgcaagaagcactaataagctcgggtgaaaaaaaaaatacaaacaacgggaaatcggttgccattaaaacaccgac 42442114  T
Q  198 tccaacaaaaacccctttaaaaaccaccc 226  Q
    || |||||||||||| |||||||||||||    
T  42442115 tcgaacaaaaacccc-ttaaaaaccaccc 42442142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 90 - 140
Target Start/End: Complemental strand, 28447852 - 28447802
Alignment:
Q  90 gaataggcaaaatattattaaccaacaagcccgtgcgagaagcactaataa 140  Q
    |||| ||||||||||||||||||||||||||||||| ||||||||||||||    
T  28447852 gaatcggcaaaatattattaaccaacaagcccgtgcaagaagcactaataa 28447802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 166 - 219
Target Start/End: Complemental strand, 47028990 - 47028937
Alignment:
Q  166 aaggggaaatcggttgccgcacaaacaccgactccaacaaaaacccctttaaaa 219  Q
    ||||||||||||||||||||| |||||||| ||| |||||||||||||| ||||    
T  47028990 aaggggaaatcggttgccgcaaaaacaccggctcgaacaaaaaccccttaaaaa 47028937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 90 - 149
Target Start/End: Complemental strand, 31834024 - 31833965
Alignment:
Q  90 gaataggcaaaatattattaaccaacaagcccgtgcgagaagcactaataagctcgggtg 149  Q
    |||| |||||||||||||||||||||||  |||||| ||| ||||||| |||||||||||    
T  31834024 gaattggcaaaatattattaaccaacaaatccgtgcaagatgcactaacaagctcgggtg 31833965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 104 - 151
Target Start/End: Complemental strand, 46757425 - 46757378
Alignment:
Q  104 ttattaaccaacaagcccgtgcgagaagcactaataagctcgggtgga 151  Q
    |||||||||||||||||||||| ||| |||||||||||||| ||||||    
T  46757425 ttattaaccaacaagcccgtgcaagatgcactaataagctcaggtgga 46757378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 98 - 151
Target Start/End: Complemental strand, 26385087 - 26385035
Alignment:
Q  98 aaaatattattaaccaacaagcccgtgcgagaagcactaataagctcgggtgga 151  Q
    ||||||||||||||| |||||||||| | |||||| |||||||||| |||||||    
T  26385087 aaaatattattaaccgacaagcccgt-caagaagcgctaataagcttgggtgga 26385035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 166 - 227
Target Start/End: Original strand, 41955963 - 41956024
Alignment:
Q  166 aaggggaaatcggttgccgcacaaacaccgactccaacaaaaacccctttaaaaaccaccca 227  Q
    ||||||||||||||||||  |  ||||||| ||| |||||||| ||||| ||||||||||||    
T  41955963 aaggggaaatcggttgccataataacaccggctcgaacaaaaatcccttaaaaaaccaccca 41956024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 93; Significance: 4e-45; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 90 - 274
Target Start/End: Original strand, 30836127 - 30836320
Alignment:
Q  90 gaataggcaaaatattattaaccaacaagcccgtgcgagaagcactaat----aagctcgggtggagnnnnnnnncaaa-----gaaggggaaatcggtt 180  Q
    |||| ||||||||||||||||||||||||| ||||||||||||||||||    |||||||| |||||         |||     ||||||||||||| ||    
T  30836127 gaatcggcaaaatattattaaccaacaagctcgtgcgagaagcactaattaataagctcggatggagaaaaaaaaaaaaaaaaagaaggggaaatcgatt 30836226  T
Q  181 gccgcacaaacaccgactccaacaaaaacccctttaaaaaccacccacaaaccaaggtgccgcctataaacgtaacactgtaaacaccaggaaa 274  Q
    |||||||||| |||| ||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||    
T  30836227 gccgcacaaataccggctcgaacaaaaacccctttaaaaaccacccacaaacaaaggtgccgcctataaacgtaacaccgtaaacaccaggaaa 30836320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 4 - 73
Target Start/End: Complemental strand, 31944022 - 31943953
Alignment:
Q  4 actgatagtcatgttgaaacttgtatcattttctaaaagtgaacagtgggagaatcaatgtattgttatt 73  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  31944022 actgatagtcatgttgaaacttgtatcattttctaaaagtgaacaatgggagaatcaatgtattgttatt 31943953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 90 - 226
Target Start/End: Complemental strand, 22839387 - 22839250
Alignment:
Q  90 gaataggcaaaatattattaaccaacaagcccgtgcgagaagcactaataagctcgggtggagnnnnnnnncaaagaaggggaaatcggttgccgca-ca 188  Q
    |||| ||||||||||||||||||||||||||||||| ||| ||||||||||| |||| |||||        |||||||| ||||||||||||||  |  |    
T  22839387 gaatcggcaaaatattattaaccaacaagcccgtgcaagacgcactaataagttcggatggaggaaaaaaacaaagaagaggaaatcggttgccatataa 22839288  T
Q  189 aacaccgactccaacaaaaacccctttaaaaaccaccc 226  Q
    |||| || ||| |||||||| |||||||||||||||||    
T  22839287 aacatcggctcgaacaaaaatccctttaaaaaccaccc 22839250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 96 - 220
Target Start/End: Original strand, 38086419 - 38086544
Alignment:
Q  96 gcaaaatattattaaccaacaagcccgtgcgagaagcactaataagctcgggtggag-nnnnnnnncaaagaaggggaaatcggttgccgcacaaacacc 194  Q
    ||||||||||||||||||| |||||||||| ||| ||||||||||||||||||||||         |||||||||| ||||||||||||  |||||| |     
T  38086419 gcaaaatattattaaccaataagcccgtgcaagacgcactaataagctcgggtggagaaaaaaatacaaagaagggaaaatcggttgccatacaaactct 38086518  T
Q  195 gactccaacaaaaacccctttaaaaa 220  Q
    | ||| ||||||||||||||||||||    
T  38086519 ggctcgaacaaaaacccctttaaaaa 38086544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 95 - 151
Target Start/End: Original strand, 40930834 - 40930890
Alignment:
Q  95 ggcaaaatattattaaccaacaagcccgtgcgagaagcactaataagctcgggtgga 151  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  40930834 ggcaaaatattattaaccaacaagcccgtgcaagaagcactaataagctcgggtgga 40930890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 95 - 219
Target Start/End: Original strand, 5200486 - 5200609
Alignment:
Q  95 ggcaaaatattattaaccaacaagcccgtgcgagaagcactaataagctcgggtggagnnnnnnnncaaagaaggggaaatcggttgccgcacaaacacc 194  Q
    |||||||||||||||||||||||| |||||| |||| |||||||||| | ||||||||        || | ||||| |||||||||||||||||||||||    
T  5200486 ggcaaaatattattaaccaacaagtccgtgcaagaaacactaataagtttgggtggag-aaaaaaacatacaagggaaaatcggttgccgcacaaacacc 5200584  T
Q  195 gactccaacaaaaacccctttaaaa 219  Q
    | ||| |||||||||||||| ||||    
T  5200585 ggctcgaacaaaaaccccttaaaaa 5200609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 95 - 226
Target Start/End: Original strand, 24200626 - 24200753
Alignment:
Q  95 ggcaaaatattattaaccaacaagcccgtgcgagaagcactaataagctcgggtggagnnnnnnnncaaagaaggggaaatcggttgccgcacaaacacc 194  Q
    |||||||||||||||| ||||||| |||||| ||||||||||||||||| |||||||         || | ||||||||||||||||||||| |||||||    
T  24200626 ggcaaaatattattaatcaacaagtccgtgcaagaagcactaataagcttgggtgga--aaaaaaacatacaaggggaaatcggttgccgcaaaaacacc 24200723  T
Q  195 gactccaacaaaaacccctttaaaaaccaccc 226  Q
    | ||| ||||||||| |  |||||||||||||    
T  24200724 ggctcgaacaaaaacac--ttaaaaaccaccc 24200753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 99 - 151
Target Start/End: Original strand, 25829272 - 25829324
Alignment:
Q  99 aaatattattaaccaacaagcccgtgcgagaagcactaataagctcgggtgga 151  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  25829272 aaatattattaaccaacaagcccgtgcaagaagcactaataagctcgggtgga 25829324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 95 - 151
Target Start/End: Original strand, 13959223 - 13959279
Alignment:
Q  95 ggcaaaatattattaaccaacaagcccgtgcgagaagcactaataagctcgggtgga 151  Q
    ||||||||||||||| ||||||||||||||| ||||||| |||||||||||||||||    
T  13959223 ggcaaaatattattagccaacaagcccgtgcaagaagcaataataagctcgggtgga 13959279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 95 - 143
Target Start/End: Original strand, 584139 - 584187
Alignment:
Q  95 ggcaaaatattattaaccaacaagcccgtgcgagaagcactaataagct 143  Q
    ||||||||||||||| ||||||||||||| | |||||||||||||||||    
T  584139 ggcaaaatattattagccaacaagcccgtacaagaagcactaataagct 584187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 161 - 226
Target Start/End: Complemental strand, 10124925 - 10124859
Alignment:
Q  161 caaagaaggggaaatcggttgccgcacaaa-caccgactccaacaaaaacccctttaaaaaccaccc 226  Q
    |||| ||||||||||||||||||  ||||| ||||| ||| |||||||||||||| |||||||||||    
T  10124925 caaacaaggggaaatcggttgcctaacaaaacaccggctcgaacaaaaaccccttaaaaaaccaccc 10124859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 95 - 125
Target Start/End: Complemental strand, 7845168 - 7845138
Alignment:
Q  95 ggcaaaatattattaaccaacaagcccgtgc 125  Q
    |||||||||||||||||||||||||||||||    
T  7845168 ggcaaaatattattaaccaacaagcccgtgc 7845138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 102 - 151
Target Start/End: Original strand, 44362940 - 44362989
Alignment:
Q  102 tattattaaccaacaagcccgtgcgagaagcactaataagctcgggtgga 151  Q
    |||||||||||||||| || |||| ||||||||||||||| |||| ||||    
T  44362940 tattattaaccaacaatcctgtgcaagaagcactaataagttcggatgga 44362989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 84; Significance: 1e-39; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 96 - 366
Target Start/End: Original strand, 16662312 - 16662584
Alignment:
Q  96 gcaaaatattattaaccaacaagcccgtgcgagaagcactaataagctcgggtggagnnnnnnnncaaagaaggggaaatcggttgccgcac-aaacacc 194  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||         | |||||||| ||||| ||||||  || ||||||     
T  16662312 gcaaaatattattaaccaacaagcccgtgcgagaagcactaataagctaaggtgga---aaaaaactaagaagggaaaatctgttgccatacaaaacact 16662408  T
Q  195 gactccaacaaaaacccctttaaaaaccacccacaaaccaaggtgccgcctat-aaacgtaa--cactgtaaacaccaggaaagcacccaaaacnnnnnn 291  Q
    | |||  ||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||  |||   |||||||| |||| ||||||||||          
T  16662409 ggctcgtacaaaaacccctttaaaaaccaccctcaaacaaaggtgccgcctataaaacgtaaagcacaaaaaacaccatgaaaacacccaaaaccaaacg 16662508  T
Q  292 nggca-caagcaatgaggctgaagtatactatcaagaagctagcatactcctacctcacaaccatccgagccaaaa 366  Q
     |||| ||||||||||||||||||||||  |||| |||  ||||||||||| ||||||| |||| |||||||||||    
T  16662509 aggcaccaagcaatgaggctgaagtatatcatcatgaaagtagcatactccgacctcactaccagccgagccaaaa 16662584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 95 - 220
Target Start/End: Complemental strand, 32183409 - 32183282
Alignment:
Q  95 ggcaaaatattattaaccaa-caagcccgtgcgagaagcactaataagctcgggtgga-gnnnnnnnncaaagaaggggaaatcggttgccgcacaaaca 192  Q
    |||||||||||||||||||| ||||||||||| ||  ||||||||||||||||||||| |        |||||||||||||||||||||||  |||||||    
T  32183409 ggcaaaatattattaaccaaacaagcccgtgcaaggcgcactaataagctcgggtggaagaaaaaaaacaaagaaggggaaatcggttgccatacaaaca 32183310  T
Q  193 ccgactccaacaaaaacccctttaaaaa 220  Q
    ||| ||| ||||||||||||||||||||    
T  32183309 ccggctcgaacaaaaacccctttaaaaa 32183282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 95 - 220
Target Start/End: Complemental strand, 16572198 - 16572074
Alignment:
Q  95 ggcaaaatattattaaccaacaagcccgtgcgagaagcactaataagctcgggtggagnnnnnnnncaaagaaggggaaatcggttgccgcacaaacacc 194  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||          | | ||||||||||||||||||||| |||||||    
T  16572198 ggcaaaatattattaaccaacaagcccgtgcgagatgcactaataagctcgggtggaaaaaaaataaatacaaggggaaatcggttgccgcaaaaacacc 16572099  T
Q  195 gactccaacaaaaacccctttaaaaa 220  Q
    |  || ||| ||||||||||||||||    
T  16572098 ggttcgaac-aaaacccctttaaaaa 16572074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 90 - 232
Target Start/End: Original strand, 25641268 - 25641413
Alignment:
Q  90 gaataggcaaaatattattaaccaacaagcccgtgcgagaagcactaataagctcgggtggag--nnnnnnnncaaagaaggggaaatcggttgccgcac 187  Q
    |||| |||||||| |||||||||||||||||||||| ||||||||||| ||||| ||||||||          ||||||||||||||| |||||||  ||    
T  25641268 gaatcggcaaaatgttattaaccaacaagcccgtgcaagaagcactaaaaagcttgggtggagaaaaaaaatacaaagaaggggaaattggttgccatac 25641367  T
Q  188 aaacaccgactccaacaaaaaccccttt-aaaaaccacccacaaac 232  Q
     |||| || ||| ||||||||||| ||| |||||||||||| ||||    
T  25641368 taacatcggctcgaacaaaaacccttttaaaaaaccacccataaac 25641413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 90 - 151
Target Start/End: Original strand, 15186980 - 15187041
Alignment:
Q  90 gaataggcaaaatattattaaccaacaagcccgtgcgagaagcactaataagctcgggtgga 151  Q
    |||| ||||||||||||||||||||||||||||||| ||| ||||||||||||| |||||||    
T  15186980 gaatcggcaaaatattattaaccaacaagcccgtgcaagatgcactaataagcttgggtgga 15187041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 90 - 149
Target Start/End: Original strand, 47571570 - 47571629
Alignment:
Q  90 gaataggcaaaatattattaaccaacaagcccgtgcgagaagcactaataagctcgggtg 149  Q
    |||| ||||||||||||||||||||||| ||||||  || ||||||||||||||||||||    
T  47571570 gaatcggcaaaatattattaaccaacaaacccgtggaaggagcactaataagctcgggtg 47571629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 90 - 152
Target Start/End: Original strand, 42390771 - 42390833
Alignment:
Q  90 gaataggcaaaatattattaaccaacaagcccgtgcgagaagcactaataagctcgggtggag 152  Q
    |||| ||| |||| |||||  ||||||||||||||| ||| | ||||||||||||||||||||    
T  42390771 gaatcggctaaattttattttccaacaagcccgtgcaagacgtactaataagctcgggtggag 42390833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 96 - 130
Target Start/End: Original strand, 45511407 - 45511441
Alignment:
Q  96 gcaaaatattattaaccaacaagcccgtgcgagaa 130  Q
    |||||||||||||||||||||||||||||| ||||    
T  45511407 gcaaaatattattaaccaacaagcccgtgcaagaa 45511441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 173 - 225
Target Start/End: Original strand, 42390855 - 42390906
Alignment:
Q  173 aatcggttgccgcacaaacaccgactccaacaaaaacccctttaaaaaccacc 225  Q
    |||||||||||||  |||||||| ||| |||||||||||| ||||||||||||    
T  42390855 aatcggttgccgctaaaacaccggctcaaacaaaaacccc-ttaaaaaccacc 42390906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 61; Significance: 6e-26; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 95 - 226
Target Start/End: Original strand, 30655602 - 30655734
Alignment:
Q  95 ggcaaaatattattaaccaacaagcccgtgcgagaagcactaataagctcgggtggagnnnnnnnncaaagaaggggaaatcggttgccgcac-aaacac 193  Q
    ||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||         |||| |||||||||||||||||| ||| ||| |     
T  30655602 ggcaaaatattattaaccaacaagcccgtgcaagacgcactaataagctcgggtggaaaaaaaatacaaacaaggggaaatcggttgccacacaaaatat 30655701  T
Q  194 cgactccaacaaaaacccctttaaaaaccaccc 226  Q
    |||||| |||||||||| ||| |||||||||||    
T  30655702 cgactcgaacaaaaacctcttaaaaaaccaccc 30655734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 90 - 226
Target Start/End: Original strand, 46691844 - 46691981
Alignment:
Q  90 gaataggcaaaatattattaaccaacaagcccgtgcgagaagcactaataagctcgggtggag--nnnnnnnncaaagaaggggaaatcggttgccgcac 187  Q
    |||| ||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||          || | |||||||||||||||||| ||     
T  46691844 gaatcggcaaaatattattaaccaacaagcccgtgcaagaagcactaacaagctcgggtggagaaaaaaaatacatacaaggggaaatcggttgccacat 46691943  T
Q  188 aaacaccgactccaacaaaaacccctttaaaaaccaccc 226  Q
    |||||||| ||| |||||||||||| |||||||||||||    
T  46691944 aaacaccggctcgaacaaaaacccc-ttaaaaaccaccc 46691981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 100 - 237
Target Start/End: Original strand, 49035862 - 49036001
Alignment:
Q  100 aatattattaaccaacaagcccgtgcgagaagcactaataagctcgggtggag--nnnnnnnncaaagaaggggaaatcggttgccgcacaaacaccgac 197  Q
    ||||||||||||||||||| |||| | ||||||||||||||||||||||||||          |||| |||||||||||||||||| || ||||||||      
T  49035862 aatattattaaccaacaagtccgtacaagaagcactaataagctcgggtggagaaaaaaattacaaacaaggggaaatcggttgccacataaacaccggt 49035961  T
Q  198 tccaacaaaaacccctttaaaaaccacccacaaaccaagg 237  Q
    || |||||||||||||| |||||||||||| |||| ||||    
T  49035962 tcgaacaaaaaccccttaaaaaaccacccataaacaaagg 49036001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 95 - 220
Target Start/End: Original strand, 31424776 - 31424902
Alignment:
Q  95 ggcaaaatattattaaccaacaagcccgtgcgagaagcactaataagctcgggtggagnnnnnnnncaaagaaggggaaatcggttgccgcac-aaacac 193  Q
    ||||||||||||||||||||||| ||||||| |||| |||||||||||| ||||||||        |||||||||||||||||||||||   | ||||||    
T  31424776 ggcaaaatattattaaccaacaaacccgtgcaagaaacactaataagcttgggtggagaaaaaaaacaaagaaggggaaatcggttgccattcgaaacac 31424875  T
Q  194 cgactccaacaaaaacccctttaaaaa 220  Q
    || ||| | ||||||||||||||||||    
T  31424876 cggctcgatcaaaaacccctttaaaaa 31424902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 97 - 219
Target Start/End: Complemental strand, 41702992 - 41702870
Alignment:
Q  97 caaaatattattaaccaacaagcccgtgcgagaagcactaataagctcgggtggagnnnnnnnncaaagaaggggaaatcggttgccgcacaaacaccga 196  Q
    ||||||||||| ||||||| ||||||||| || |||||||||||| | ||||||||        || | |||||||| |||||||||||||||||||||     
T  41702992 caaaatattatcaaccaactagcccgtgcaaggagcactaataagtttgggtggagaaaaaaaacatacaaggggaagtcggttgccgcacaaacaccgg 41702893  T
Q  197 ctccaacaaaaacccctttaaaa 219  Q
    ||| |||||||||||||| ||||    
T  41702892 ctcgaacaaaaaccccttaaaaa 41702870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 95 - 151
Target Start/End: Original strand, 1039067 - 1039123
Alignment:
Q  95 ggcaaaatattattaaccaacaagcccgtgcgagaagcactaataagctcgggtgga 151  Q
    |||||||||||||||||| |||||||||||| |||||||||||||||||||||||||    
T  1039067 ggcaaaatattattaaccgacaagcccgtgcaagaagcactaataagctcgggtgga 1039123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 99 - 225
Target Start/End: Complemental strand, 33320825 - 33320704
Alignment:
Q  99 aaatattattaaccaacaagcccgtgcgagaagcactaataagctcgggtggagnnnnnnnncaaagaaggggaaatcggttgccgcacaaacaccgact 198  Q
    ||||||| ||||||||||||||||||| ||||||||||||||||||||||||           ||| |||||||||| |||||||  |||||||||| ||    
T  33320825 aaatattgttaaccaacaagcccgtgcaagaagcactaataagctcgggtgg-----gaaaaaaaacaaggggaaattggttgccttacaaacaccggct 33320731  T
Q  199 ccaacaaaaacccctttaaaaaccacc 225  Q
    | ||||||| |||||| ||||||||||    
T  33320730 cgaacaaaacccccttaaaaaaccacc 33320704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 96 - 151
Target Start/End: Original strand, 36615808 - 36615863
Alignment:
Q  96 gcaaaatattattaaccaacaagcccgtgcgagaagcactaataagctcgggtgga 151  Q
    |||||||||||||| ||||||||||||||| |||||||||||||||||||||||||    
T  36615808 gcaaaatattattacccaacaagcccgtgcaagaagcactaataagctcgggtgga 36615863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 95 - 152
Target Start/End: Complemental strand, 42598114 - 42598057
Alignment:
Q  95 ggcaaaatattattaaccaacaagcccgtgcgagaagcactaataagctcgggtggag 152  Q
    ||||||||||||||||||||||| ||||||| ||||||||||||||||| ||||||||    
T  42598114 ggcaaaatattattaaccaacaaacccgtgcaagaagcactaataagcttgggtggag 42598057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 99 - 145
Target Start/End: Complemental strand, 32679069 - 32679023
Alignment:
Q  99 aaatattattaaccaacaagcccgtgcgagaagcactaataagctcg 145  Q
    |||| |||||||||||||||||||||| ||| |||||||||||||||    
T  32679069 aaattttattaaccaacaagcccgtgcaagacgcactaataagctcg 32679023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 98 - 151
Target Start/End: Original strand, 19471096 - 19471149
Alignment:
Q  98 aaaatattattaaccaacaagcccgtgcgagaagcactaataagctcgggtgga 151  Q
    ||||||||||||| ||||||||| |||| ||  |||||||||||||||||||||    
T  19471096 aaaatattattaagcaacaagccggtgcaaggtgcactaataagctcgggtgga 19471149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 98 - 151
Target Start/End: Complemental strand, 22197797 - 22197744
Alignment:
Q  98 aaaatattattaaccaacaagcccgtgcgagaagcactaataagctcgggtgga 151  Q
    ||||||||||||||||||||| |||||| ||  ||||||| |||||||||||||    
T  22197797 aaaatattattaaccaacaagtccgtgcaaggtgcactaaaaagctcgggtgga 22197744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 98 - 151
Target Start/End: Original strand, 22240024 - 22240077
Alignment:
Q  98 aaaatattattaaccaacaagcccgtgcgagaagcactaataagctcgggtgga 151  Q
    ||||||||||||||||||||| |||||| ||  ||||||| |||||||||||||    
T  22240024 aaaatattattaaccaacaagtccgtgcaaggtgcactaaaaagctcgggtgga 22240077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 166 - 226
Target Start/End: Complemental strand, 22197727 - 22197668
Alignment:
Q  166 aaggggaaatcggttgccgcacaaacaccgactccaacaaaaacccctttaaaaaccaccc 226  Q
    |||||||||||| || || || |||||||| ||| |||||||||||||| |||||||||||    
T  22197727 aaggggaaatcgattaccaca-aaacaccgtctcgaacaaaaaccccttaaaaaaccaccc 22197668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 166 - 226
Target Start/End: Original strand, 22240094 - 22240153
Alignment:
Q  166 aaggggaaatcggttgccgcacaaacaccgactccaacaaaaacccctttaaaaaccaccc 226  Q
    |||||||||||| || || || |||||||| ||| |||||||||||||| |||||||||||    
T  22240094 aaggggaaatcgattaccaca-aaacaccgtctcgaacaaaaaccccttaaaaaaccaccc 22240153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 55; Significance: 2e-22; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 99 - 237
Target Start/End: Original strand, 23172981 - 23173118
Alignment:
Q  99 aaatattattaaccaacaagcccgtgcgagaagcactaataagctcgggtggagnnnnnnnncaaagaaggggaaatcggttgccgcacaaacaccgact 198  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||         |||| |||| |||||| ||||||  | |||||||| ||    
T  23172981 aaatattattaaccaacaagcccgtgcaagaagcactaataagctcgggtggaaaaaaaatacaaacaaggagaaatcagttgccctataaacaccggct 23173080  T
Q  199 ccaacaaaaacccctttaaaaaccacccacaaaccaagg 237  Q
    | ||| |||||||| |||||||||||||| |||| ||||    
T  23173081 cgaac-aaaacccccttaaaaaccacccataaacaaagg 23173118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 98 - 226
Target Start/End: Complemental strand, 10431185 - 10431056
Alignment:
Q  98 aaaatattattaaccaacaagcccgtgcgagaagcactaataagctcgggtggagnnnnnnnn-caaagaaggggaaatcggttgccgcacaaacaccga 196  Q
    ||||||||||||| |||||| ||||||| ||||||| ||||||| ||||||||||         |||| |||| ||||||||||||| ||||||||||||    
T  10431185 aaaatattattaatcaacaaacccgtgcaagaagcattaataagttcgggtggagaaaaaaaaacaaacaaggagaaatcggttgccacacaaacaccga 10431086  T
Q  197 ctccaacaaaaacccctttaaaaaccaccc 226  Q
    ||| |||||||||| | | |||||||||||    
T  10431085 ctcgaacaaaaacctcataaaaaaccaccc 10431056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 97 - 150
Target Start/End: Complemental strand, 22887337 - 22887284
Alignment:
Q  97 caaaatattattaaccaacaagcccgtgcgagaagcactaataagctcgggtgg 150  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  22887337 caaaatattattaaccaacaagcccgtgcgagatgcactaataagctcgggtgg 22887284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 96 - 226
Target Start/End: Original strand, 819134 - 819261
Alignment:
Q  96 gcaaaatattattaaccaacaagcccgtgcgagaagcactaataagctcgggtggagnnnnnnnncaaagaaggggaaatcggttgccgcacaaacaccg 195  Q
    |||||||||||||| |||| ||| |||||  ||||||||||||||| |||||||||          ||| || |||||||||||||||  |||||||||     
T  819134 gcaaaatattattacccaataagtccgtgtaagaagcactaataagttcgggtggaaaaaaaata-aaacaaagggaaatcggttgcc--acaaacacca 819230  T
Q  196 actccaacaaaaacccctttaaaaaccaccc 226  Q
    |||| |||||||||||||| |||||||||||    
T  819231 actcgaacaaaaaccccttaaaaaaccaccc 819261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 90 - 141
Target Start/End: Original strand, 9597753 - 9597804
Alignment:
Q  90 gaataggcaaaatattattaaccaacaagcccgtgcgagaagcactaataag 141  Q
    |||| |||||||||||||||||||||||||| |||| |||||||||||||||    
T  9597753 gaatcggcaaaatattattaaccaacaagcctgtgcaagaagcactaataag 9597804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 99 - 150
Target Start/End: Original strand, 9931804 - 9931855
Alignment:
Q  99 aaatattattaaccaacaagcccgtgcgagaagcactaataagctcgggtgg 150  Q
    ||||||||||||||||||||||||||| ||||||||||| ||||| ||||||    
T  9931804 aaatattattaaccaacaagcccgtgcaagaagcactaacaagcttgggtgg 9931855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 97 - 149
Target Start/End: Complemental strand, 25539947 - 25539896
Alignment:
Q  97 caaaatattattaaccaacaagcccgtgcgagaagcactaataagctcgggtg 149  Q
    ||||||||||||| ||||||||||||||| ||||||| |||||||||||||||    
T  25539947 caaaatattatta-ccaacaagcccgtgcaagaagcattaataagctcgggtg 25539896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 96 - 151
Target Start/End: Original strand, 3677795 - 3677849
Alignment:
Q  96 gcaaaatattattaaccaacaagcccgtgcgagaagcactaataagctcgggtgga 151  Q
    |||| ||||||||| ||||||||||| ||||||| |||||||||||||||||||||    
T  3677795 gcaatatattatta-ccaacaagcccatgcgagatgcactaataagctcgggtgga 3677849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 165 - 226
Target Start/End: Complemental strand, 2292223 - 2292161
Alignment:
Q  165 gaaggggaaatcggttgccgcacaaa-caccgactccaacaaaaacccctttaaaaaccaccc 226  Q
    |||||||||||||||||||  ||||| ||||| ||| |||||||||||||| |||||||||||    
T  2292223 gaaggggaaatcggttgcctaacaaaacaccggctcgaacaaaaaccccttaaaaaaccaccc 2292161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 167 - 232
Target Start/End: Original strand, 9931877 - 9931941
Alignment:
Q  167 aggggaaatcggttgccgcacaaacaccgactccaacaaaaacccctttaaaaaccacccacaaac 232  Q
    ||||||||||||||||||||||||||||  ||| ||||||||| || | |||||||||||| ||||    
T  9931877 aggggaaatcggttgccgcacaaacaccagctcgaacaaaaacacc-tcaaaaaccacccaaaaac 9931941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 95 - 146
Target Start/End: Original strand, 42241593 - 42241644
Alignment:
Q  95 ggcaaaatattattaaccaacaagcccgtgcgagaagcactaataagctcgg 146  Q
    |||||||||||||||||||| ||| ||| || ||| ||||||||||||||||    
T  42241593 ggcaaaatattattaaccaataagtccgggcaagatgcactaataagctcgg 42241644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 54; Significance: 8e-22; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 95 - 227
Target Start/End: Complemental strand, 41419748 - 41419616
Alignment:
Q  95 ggcaaaatattattaaccaacaagcccgtgcgagaagcactaataagctcgggtggagnnnnnnnncaa-agaaggggaaatcggttgccgcacaaacac 193  Q
    ||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||          || | ||||||||||||||||||  |  |||||    
T  41419748 ggcaaaatattattaaccaacaagcccgtgcaagatgcactaataagctcgggtggaaaaaaaaacaaatacaaggggaaatcggttgccataataacac 41419649  T
Q  194 cgactccaacaaaaacccctttaaaaaccaccca 227  Q
    |||||| |||||||||||| ||||||||||||||    
T  41419648 cgactcgaacaaaaacccc-ttaaaaaccaccca 41419616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 94 - 227
Target Start/End: Original strand, 14732343 - 14732474
Alignment:
Q  94 aggcaaaatattattaaccaacaagcccgtgcgagaagcactaataagctcgggtggagnnnnnnnncaaagaaggggaaatcggttgccgcacaaacac 193  Q
    |||||||||||||||||||||||||||||||||||  |||||||||||||||||||| |         | | ||||||||||||||| ||||| ||| ||    
T  14732343 aggcaaaatattattaaccaacaagcccgtgcgaggtgcactaataagctcgggtgg-gaaaaaaataatacaaggggaaatcggttaccgcaaaaatac 14732441  T
Q  194 cgactccaacaaaaacccctttaaaaaccaccca 227  Q
    |  ||| |||||||||||| ||||||||||||||    
T  14732442 cagctcgaacaaaaacccc-ttaaaaaccaccca 14732474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 104 - 226
Target Start/End: Original strand, 41378216 - 41378332
Alignment:
Q  104 ttattaaccaacaagcccgtgcgagaagcactaataagctcgggtggagnnnnnnnncaaagaaggggaaatcggttgccgcacaaacaccgactccaac 203  Q
    |||||||||||||||||||||  ||| |||||||||||||||||||||         |||||   ||||||||||||||| ||||||| ||| ||| ||     
T  41378216 ttattaaccaacaagcccgtgaaagatgcactaataagctcgggtgga---aaaatacaaag---gggaaatcggttgccacacaaactccggctcgaat 41378309  T
Q  204 aaaaacccctttaaaaaccaccc 226  Q
    |||||||||||||||||||||||    
T  41378310 aaaaacccctttaaaaaccaccc 41378332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 95 - 220
Target Start/End: Original strand, 22649069 - 22649194
Alignment:
Q  95 ggcaaaatattattaaccaacaagcccgtgcgagaagcactaataagctcgggtggagnnnnnnnncaaagaaggggaaatcggttgcc-gcacaaacac 193  Q
    |||||||| |||||||||||||||||||||| ||||| ||||||||||| |||| |||        |||||||||||||||||||||||    |||||||    
T  22649069 ggcaaaattttattaaccaacaagcccgtgcaagaagtactaataagcttgggtagag-aaaaaaacaaagaaggggaaatcggttgccattccaaacac 22649167  T
Q  194 cgactccaacaaaaacccctttaaaaa 220  Q
    || ||  | ||||||||||||||||||    
T  22649168 cggcttgatcaaaaacccctttaaaaa 22649194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 95 - 149
Target Start/End: Complemental strand, 38908797 - 38908743
Alignment:
Q  95 ggcaaaatattattaaccaacaagcccgtgcgagaagcactaataagctcgggtg 149  Q
    |||||||||||||||||||| ||| |||||| ||| |||||||||||||||||||    
T  38908797 ggcaaaatattattaaccaataaggccgtgcaagatgcactaataagctcgggtg 38908743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 3e-21; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 90 - 220
Target Start/End: Complemental strand, 15859234 - 15859100
Alignment:
Q  90 gaataggcaaaatattattaaccaa--caagcccgtgcgagaagcactaataagctcgggtggagnnnnnnnn--caaagaaggggaaatcggttgccgc 185  Q
    |||| |||||||||||||||| |||  ||||||||||| ||  ||||||||||||||||||||||          |||||||||||||||||||||||      
T  15859234 gaatcggcaaaatattattaatcaaaacaagcccgtgcaaggcgcactaataagctcgggtggagaaaaaaaaaacaaagaaggggaaatcggttgccaa 15859135  T
Q  186 acaaacaccgactccaacaaaaacccctttaaaaa 220  Q
    |||||||||| ||| ||||||||||||||||||||    
T  15859134 acaaacaccggctcgaacaaaaacccctttaaaaa 15859100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 98 - 226
Target Start/End: Complemental strand, 10247035 - 10246910
Alignment:
Q  98 aaaatattattaaccaacaagcccgtgcgagaagcactaataagctcgggtggagnnnnnnnncaaagaaggggaaatcggttgccgcacaaacaccgac 197  Q
    |||||||||||||||||||||||||||| ||||||||||| | | || |||||||        |||||||||| |||||||||| | ||||| ||||| |    
T  10247035 aaaatattattaaccaacaagcccgtgcaagaagcactaaaaggttcaggtggagaaaaaa--caaagaagggaaaatcggttgtcacacaa-caccggc 10246939  T
Q  198 tccaacaaaaacccctttaaaaaccaccc 226  Q
    || ||||||||||||||||||||||||||    
T  10246938 tcgaacaaaaacccctttaaaaaccaccc 10246910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 95 - 226
Target Start/End: Complemental strand, 11546895 - 11546765
Alignment:
Q  95 ggcaaaatattattaaccaacaagcccgtgcgagaagcactaataagctcgggtggagnnnnnnnncaaagaaggggaaatcggttgccgcacaaacacc 194  Q
    |||||||||||||||||  |||||||||||| || ||||||||||||||||||| |||        ||||||||| ||||||||||| |  |||||||||    
T  11546895 ggcaaaatattattaactgacaagcccgtgcaagtagcactaataagctcgggt-gagaaaaaaaacaaagaaggagaaatcggttgtcatacaaacacc 11546797  T
Q  195 gactccaacaaaaacccctttaaaaaccaccc 226  Q
    | ||| ||||||||| |||| |||||| ||||    
T  11546796 ggctcgaacaaaaactccttaaaaaactaccc 11546765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 99 - 226
Target Start/End: Complemental strand, 34761287 - 34761160
Alignment:
Q  99 aaatattattaaccaacaagcccgtgcgagaagcactaataagctcgggtggagnnnnnnnncaaagaaggggaaatcggttgccgcacaaacaccgact 198  Q
    |||||||||||| | |||||||||||| || |||||||||||||||||||||          ||||||||  ||||||||||| |  |||||||||||||    
T  34761287 aaatattattaaacgacaagcccgtgcaagtagcactaataagctcgggtgggaaaaaaatacaaagaagaagaaatcggttgtcatacaaacaccgact 34761188  T
Q  199 ccaacaaaaacccctttaaaaaccaccc 226  Q
    | ||||||||| |||| |||||||||||    
T  34761187 cgaacaaaaactccttaaaaaaccaccc 34761160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 90 - 151
Target Start/End: Complemental strand, 6575858 - 6575797
Alignment:
Q  90 gaataggcaaaatattattaaccaacaagcccgtgcgagaagcactaataagctcgggtgga 151  Q
    |||| |||||||||||||||| |||||||||||||| ||||||||||||||| |||||||||    
T  6575858 gaatcggcaaaatattattaatcaacaagcccgtgcaagaagcactaataagttcgggtgga 6575797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 98 - 152
Target Start/End: Complemental strand, 33984887 - 33984833
Alignment:
Q  98 aaaatattattaaccaacaagcccgtgcgagaagcactaataagctcgggtggag 152  Q
    |||||||||||| |||||||||||||  ||| |||||||||||||||||||||||    
T  33984887 aaaatattattagccaacaagcccgtatgaggagcactaataagctcgggtggag 33984833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 90 - 226
Target Start/End: Original strand, 33112714 - 33112851
Alignment:
Q  90 gaataggcaaaatattattaaccaacaagcccgtgcgagaagcactaataagctcgggtgg-agnnnnnnnncaaagaaggggaaatcggttgccgcaca 188  Q
    |||| ||||||||||||||||||||||||||||||| ||| ||||||| ||||| ||| || |         |||  ||||||||||||||||||  |||    
T  33112714 gaatcggcaaaatattattaaccaacaagcccgtgcaagacgcactaaaaagcttgggggggaaaaaaaaaacaagcaaggggaaatcggttgccataca 33112813  T
Q  189 aacaccgactccaacaaaaacccctttaaaaaccaccc 226  Q
    |||   | ||| |||||||||||||| |||||||||||    
T  33112814 aactttggctcgaacaaaaaccccttaaaaaaccaccc 33112851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 95 - 141
Target Start/End: Complemental strand, 14459978 - 14459932
Alignment:
Q  95 ggcaaaatattattaaccaacaagcccgtgcgagaagcactaataag 141  Q
    ||||||||||||||| ||||| |||||||||||| ||||||||||||    
T  14459978 ggcaaaatattattagccaacgagcccgtgcgaggagcactaataag 14459932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 166 - 232
Target Start/End: Complemental strand, 33984813 - 33984747
Alignment:
Q  166 aaggggaaatcggttgccgcacaaacaccgactccaacaaaaacccctttaaaaaccacccacaaac 232  Q
    ||||||||||||||||||  |||||||| |  || |||||||||||||| |||||||||||| ||||    
T  33984813 aaggggaaatcggttgccatacaaacactggttcgaacaaaaaccccttcaaaaaccacccataaac 33984747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0209 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0209
Description:

Target: scaffold0209; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 95 - 143
Target Start/End: Original strand, 12899 - 12947
Alignment:
Q  95 ggcaaaatattattaaccaacaagcccgtgcgagaagcactaataagct 143  Q
    ||||||||||||||| ||||||||||||| | |||||||||||||||||    
T  12899 ggcaaaatattattagccaacaagcccgtacaagaagcactaataagct 12947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University