View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11142_low_16 (Length: 491)
Name: NF11142_low_16
Description: NF11142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11142_low_16 |
 | |
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| [»] scaffold0028 (2 HSPs) |
| | |
|
| [»] scaffold0036 (1 HSPs) |
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|
Alignment Details
Target: scaffold0028 (Bit Score: 311; Significance: 1e-175; HSPs: 2)
Name: scaffold0028
Description:
Target: scaffold0028; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 22 - 367
Target Start/End: Original strand, 108911 - 109257
Alignment:
| Q |
22 |
ctctgctcctgtaaaagctcaaacctttgatgaactaatcaacatcaaacccaaacaatccattttaaatgaactaaggaaatccattagactctcctct |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| |
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|
| T |
108911 |
ctctgctcctgtaaaagctcaaacctttgatgaactaatcaacatcaaacccaaacaatccattttaaatgaactaagaaaatccattaaactctcctct |
109010 |
T |
|
| Q |
122 |
aaaccctcgaaa-gtctcttacattgaccttgagaatgaatctgagacctttatacaagctcaaaaccctgccaaatgactcaaacaatactcataagct |
220 |
Q |
| |
|
|||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||| |||| |
|
|
| T |
109011 |
aaaccctcaaaaagtctcttacattgaccttgagaatgaatctgagacctttatacaagctcaaaacccagccaaacgactcaaacaatactcattagct |
109110 |
T |
|
| Q |
221 |
ttttcaccatacgatcgcaaggaagctaagaaggaaaaaatgctggaagatatcgtctataaatctgttaacattaaggaaaaactaatcttgaatccat |
320 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
109111 |
ttttcaccatacgatcgcaaggaagctaagaaggaaaaaatgctggaagatatcgtctctaaatctgttaacattaaggaaaaactaatcttgaatccat |
109210 |
T |
|
| Q |
321 |
acctaacaaacccagcacctgaaattccttcaagacctctctgtgaa |
367 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
109211 |
acctaacaaacccagcacctgaaattccttcaagacctctctgtgaa |
109257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0028; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 364 - 479
Target Start/End: Original strand, 109283 - 109399
Alignment:
| Q |
364 |
tgaagagtaagagcattgtactcgatgttgtaatgacaagtattggttggaaagaattttgtgagttagatcagttaatttatccaaacctagttcaaca |
463 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
109283 |
tgaagagtaagagcattgtactcgatgttgtaatgacaagtattggttggaaagaattttgtgagttagatcagttaatttatccaaacctagttcaaca |
109382 |
T |
|
| Q |
464 |
attct-ctcatccccta |
479 |
Q |
| |
|
|| || ||||||||||| |
|
|
| T |
109383 |
atcctactcatccccta |
109399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 22 - 321
Target Start/End: Original strand, 21756999 - 21757298
Alignment:
| Q |
22 |
ctctgctcctgtaaaagctcaaacctttgatgaactaatcaacatcaaacccaaacaatccattttaaatgaactaaggaaatccattagactctcctct |
121 |
Q |
| |
|
|||||||||| | |||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| ||||||||||||||||||||| |
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|
| T |
21756999 |
ctctgctcctatgaaagctcaaacctttgatgaactaatcaacatcaaacctaaacaatccattacaaatgaactaagaaaatccattagactctcctct |
21757098 |
T |
|
| Q |
122 |
aaaccctcgaaagtctcttacattgaccttgagaatgaatctgagacctttatacaagctcaaaaccctgccaaatgactcaaacaatactcataagctt |
221 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| ||||| ||||| |
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|
| T |
21757099 |
aaaccctcgaaagtctcttacattgaccttgagaatgaatctgattcctttatacaagctcaaaaccctgccaaacgactcaaacaatcctcatcagctt |
21757198 |
T |
|
| Q |
222 |
tttcaccatacgatcgcaaggaagctaagaaggaaaaaatgctggaagatatcgtctataaatctgttaacattaaggaaaaactaatcttgaatccata |
321 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21757199 |
tttcaccgtacgatcgcaaggaagctaagaaggaaaaaatgctggaagatatcgtctcaaaatctgttaacattaaggaaaaactaatcttgaatccata |
21757298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 172; Significance: 3e-92; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 22 - 237
Target Start/End: Original strand, 612981 - 613196
Alignment:
| Q |
22 |
ctctgctcctgtaaaagctcaaacctttgatgaactaatcaacatcaaacccaaacaatccattttaaatgaactaaggaaatccattagactctcctct |
121 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| ||||||||||||||||||||| |
|
|
| T |
612981 |
ctctgctcctgtgaaagctcaaacctttgatgaactaatcaacatcaaacccaaacaatccttttcaaatgaactaagaaaatccattagactctcctct |
613080 |
T |
|
| Q |
122 |
aaaccctcgaaagtctcttacattgaccttgagaatgaatctgagacctttatacaagctcaaaaccctgccaaatgactcaaacaatactcataagctt |
221 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| |||||| ||| | |
|
|
| T |
613081 |
aaaccttcgaaagtctcttacattgaccttgagaatgaatctgagacctttacacaagctcaaaaccctgccaaacgactcaaacaacactcatcagcct |
613180 |
T |
|
| Q |
222 |
tttcaccatacgatcg |
237 |
Q |
| |
|
||||||| |||||||| |
|
|
| T |
613181 |
tttcaccgtacgatcg |
613196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 88 - 297
Target Start/End: Original strand, 13935912 - 13936121
Alignment:
| Q |
88 |
aaatgaactaaggaaatccattagactctcctctaaaccctcgaaagtctcttacattgaccttgagaatgaatctgagacctttatacaagctcaaaac |
187 |
Q |
| |
|
|||||| || || ||||||||||| || ||| |||||||| ||||| || |||||| ||||||| |||||| | || || || ||| ||||||| |
|
|
| T |
13935912 |
aaatgatcttagaaaatccattaggctaagctcaaaaccctctaaagtttcatacattaaccttgataatgaaccagattccaacatgcaaactcaaaat |
13936011 |
T |
|
| Q |
188 |
cctgccaaatgactcaaacaatactcataagctttttcaccatacgatcgcaaggaagctaagaaggaaaaaatgctggaagatatcgtctataaatctg |
287 |
Q |
| |
|
||||||||| |||||||| || |||| ||||||||||||||||||||||||||| ||| |||| ||||||||||||||||||||| ||| ||| ||| |
|
|
| T |
13936012 |
cctgccaaacgactcaaatcatcttcatcagctttttcaccatacgatcgcaaggaggctcagaaagaaaaaatgctggaagatatcatctcaaaacctg |
13936111 |
T |
|
| Q |
288 |
ttaacattaa |
297 |
Q |
| |
|
| |||||||| |
|
|
| T |
13936112 |
tcaacattaa |
13936121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 172; Significance: 3e-92; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 22 - 237
Target Start/End: Complemental strand, 722305 - 722090
Alignment:
| Q |
22 |
ctctgctcctgtaaaagctcaaacctttgatgaactaatcaacatcaaacccaaacaatccattttaaatgaactaaggaaatccattagactctcctct |
121 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| ||||||||||||||||||||| |
|
|
| T |
722305 |
ctctgctcctgtgaaagctcaaacctttgatgaactaatcaacatcaaacccaaacaatccttttcaaatgaactaagaaaatccattagactctcctct |
722206 |
T |
|
| Q |
122 |
aaaccctcgaaagtctcttacattgaccttgagaatgaatctgagacctttatacaagctcaaaaccctgccaaatgactcaaacaatactcataagctt |
221 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| |||||| ||| | |
|
|
| T |
722205 |
aaaccttcgaaagtctcttacattgaccttgagaatgaatctgagacctttacacaagctcaaaaccctgccaaacgactcaaacaacactcatcagcct |
722106 |
T |
|
| Q |
222 |
tttcaccatacgatcg |
237 |
Q |
| |
|
||||||| |||||||| |
|
|
| T |
722105 |
tttcaccgtacgatcg |
722090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 172; Significance: 3e-92; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 22 - 237
Target Start/End: Original strand, 118398 - 118613
Alignment:
| Q |
22 |
ctctgctcctgtaaaagctcaaacctttgatgaactaatcaacatcaaacccaaacaatccattttaaatgaactaaggaaatccattagactctcctct |
121 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| ||||||||||||||||||||| |
|
|
| T |
118398 |
ctctgctcctgtgaaagctcaaacctttgatgaactaatcaacatcaaacccaaacaatccttttcaaatgaactaagaaaatccattagactctcctct |
118497 |
T |
|
| Q |
122 |
aaaccctcgaaagtctcttacattgaccttgagaatgaatctgagacctttatacaagctcaaaaccctgccaaatgactcaaacaatactcataagctt |
221 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| |||||| ||| | |
|
|
| T |
118498 |
aaaccttcgaaagtctcttacattgaccttgagaatgaatctgagacctttacacaagctcaaaaccctgccaaacgactcaaacaacactcatcagcct |
118597 |
T |
|
| Q |
222 |
tttcaccatacgatcg |
237 |
Q |
| |
|
||||||| |||||||| |
|
|
| T |
118598 |
tttcaccgtacgatcg |
118613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 22 - 237
Target Start/End: Original strand, 14913641 - 14913856
Alignment:
| Q |
22 |
ctctgctcctgtaaaagctcaaacctttgatgaactaatcaacatcaaacccaaacaatccattttaaatgaactaaggaaatccattagactctcctct |
121 |
Q |
| |
|
|||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| ||||| ||||||||||||||| |
|
|
| T |
14913641 |
ctctgctcatgtgaaagctcaaacctttgatgaactaatcaacatcaaacccaaacaatccatttcaaatgaattaagaaaatcaattagactctcctct |
14913740 |
T |
|
| Q |
122 |
aaaccctcgaaagtctcttacattgaccttgagaatgaatctgagacctttatacaagctcaaaaccctgccaaatgactcaaacaatactcataagctt |
221 |
Q |
| |
|
||| |||||||| ||||||||||||||||| | |||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||| |
|
|
| T |
14913741 |
aaatcctcgaaaatctcttacattgaccttaaagatgaatctgagacctttacacaagctcaaaaccctgtcaaatgactcaaacaatactcatcagctt |
14913840 |
T |
|
| Q |
222 |
tttcaccatacgatcg |
237 |
Q |
| |
|
||||||| ||| |||| |
|
|
| T |
14913841 |
tttcaccgtacaatcg |
14913856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0036 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: scaffold0036
Description:
Target: scaffold0036; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 176 - 367
Target Start/End: Complemental strand, 101853 - 101662
Alignment:
| Q |
176 |
caagctcaaaaccctgccaaatgactcaaacaatactcataagctttttcaccatacgatcgcaaggaagctaagaaggaaaaaatgctggaagatatcg |
275 |
Q |
| |
|
||||||||||| ||| ||||| |||||||| || ||||| ||||||||||||||| ||||||||||| ||| |||| ||||| ||| |||||||||| |
|
|
| T |
101853 |
caagctcaaaatcctaccaaacgactcaaaacatcctcatcagctttttcaccatatgatcgcaaggaggctcagaaagaaaagatgatggaagatatta |
101754 |
T |
|
| Q |
276 |
tctataaatctgttaacattaaggaaaaactaatcttgaatccatacctaacaaacccagcacctgaaattccttcaagacctctctgtgaa |
367 |
Q |
| |
|
||| ||| ||| |||||||| || || ||||||| |||||||| | ||||| ||||| |||||||| | |||||||||||||||||| |
|
|
| T |
101753 |
tctcaaaacttgtcaacattaaagagaagataatcttaaatccatatcaaacaagtccagctcctgaaatctcgtcaagacctctctgtgaa |
101662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 33 - 153
Target Start/End: Original strand, 19692224 - 19692344
Alignment:
| Q |
33 |
taaaagctcaaacctttgatgaactaatcaacatcaaacccaaacaatccattttaaatgaactaaggaaatccattagactctcctctaaaccctcgaa |
132 |
Q |
| |
|
|||||| | |||||||||||||| || | ||||||||||| ||||| ||| | | ||||||| | || |||||||||||||| ||||| ||||| || || |
|
|
| T |
19692224 |
taaaagttgaaacctttgatgaattacttaacatcaaaccaaaacagtccctctcaaatgaaattagaaaatccattagactatcctcaaaaccttctaa |
19692323 |
T |
|
| Q |
133 |
agtctcttacattgaccttga |
153 |
Q |
| |
|
||||| || |||||||||| |
|
|
| T |
19692324 |
ggtctcctattttgaccttga |
19692344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 33 - 126
Target Start/End: Original strand, 9001105 - 9001198
Alignment:
| Q |
33 |
taaaagctcaaacctttgatgaactaatcaacatcaaacccaaacaatccattttaaatgaactaaggaaatccattagactctcctctaaacc |
126 |
Q |
| |
|
|||||||| |||||||||||||| || | | ||||||||| | ||| ||| | | ||||||| | || |||||||||||||| ||||| ||||| |
|
|
| T |
9001105 |
taaaagctgaaacctttgatgaattacttagcatcaaaccaagacagtccctctcaaatgaaattagaaaatccattagactatcctcaaaacc |
9001198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 33 - 126
Target Start/End: Original strand, 9010270 - 9010363
Alignment:
| Q |
33 |
taaaagctcaaacctttgatgaactaatcaacatcaaacccaaacaatccattttaaatgaactaaggaaatccattagactctcctctaaacc |
126 |
Q |
| |
|
|||||||| |||||||||||||| || | | ||||||||| | ||| ||| | | ||||||| | || |||||||||||||| ||||| ||||| |
|
|
| T |
9010270 |
taaaagctgaaacctttgatgaattacttagcatcaaaccaagacagtccctctcaaatgaaattagaaaatccattagactatcctcaaaacc |
9010363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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