View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11142_low_21 (Length: 448)

Name: NF11142_low_21
Description: NF11142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11142_low_21
NF11142_low_21
[»] chr8 (17 HSPs)
chr8 (11-429)||(2711019-2711437)
chr8 (11-419)||(2989309-2989717)
chr8 (178-422)||(3170170-3170414)
chr8 (177-421)||(2980199-2980443)
chr8 (177-422)||(3142065-3142310)
chr8 (170-429)||(3002284-3002543)
chr8 (177-423)||(9850999-9851245)
chr8 (177-419)||(2916030-2916272)
chr8 (190-328)||(3173747-3173885)
chr8 (11-103)||(9850830-9850922)
chr8 (178-329)||(2911073-2911224)
chr8 (178-419)||(3282404-3282639)
chr8 (16-105)||(2980518-2980607)
chr8 (11-104)||(3002612-3002705)
chr8 (16-100)||(3141901-3141985)
chr8 (178-419)||(13791255-13791490)
chr8 (11-101)||(3170000-3170090)
[»] chr6 (1 HSPs)
chr6 (11-419)||(18355709-18356117)
[»] chr1 (1 HSPs)
chr1 (11-429)||(10755390-10755811)
[»] scaffold0065 (4 HSPs)
scaffold0065 (177-422)||(45425-45670)
scaffold0065 (186-430)||(50587-50830)
scaffold0065 (11-105)||(45748-45842)
scaffold0065 (19-104)||(50915-51000)
[»] chr7 (2 HSPs)
chr7 (199-422)||(3919073-3919296)
chr7 (11-122)||(3918882-3918993)
[»] chr2 (1 HSPs)
chr2 (249-319)||(32408650-32408720)


Alignment Details
Target: chr8 (Bit Score: 295; Significance: 1e-165; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 11 - 429
Target Start/End: Original strand, 2711019 - 2711437
Alignment:
Q  11 cacagatcaaataagtcctcaattgatcccacttttcaaaactctcattccaaacgtcgtcgagaagtaacaagtatctcttaccagttaaattggcttg 110  Q
    |||| ||||||||||||||||||| ||||||||||||| ||||||| ||||||| ||| || |  | ||||||||||||| ||||||| ||||||||| |    
T  2711019 cacacatcaaataagtcctcaattcatcccacttttcataactctcgttccaaatgtcatccaagactaacaagtatctcgtaccagtcaaattggctcg 2711118  T
Q  111 aatcatattttgtaattcttctaatgtcttgtttacaacactgtctttggttaacaacgcaaccaagttcttcagaatagttttgacatcaaagctatca 210  Q
    || |||||| || || ||||||||  |||| | | ||| | |||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||     
T  2711119 aagcatattctgcaactcttctaaattcttatctgcaatattgtctttggttaacaacgcaaccatgttcttcagaatagttttgacatcaaagttatcc 2711218  T
Q  211 gagacacatacccacaaactcttttcaaaccaattttgcacttcagcatcattgtataccaattgagcaagagctgtctttcccaaaccaccaataccaa 310  Q
    |||||||||||||||| ||||||||||||| |||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2711219 gagacacatacccacatactcttttcaaacaaattttgcacttgatcatcattgtataccaattgagcaagagctgtctttcccaaaccaccaataccaa 2711318  T
Q  311 caatagcaaccaaggagacattctgattttcatgtgattgcctcaacaagcttataatcttctttttatcatcttctcttccaataatctctgattctaa 410  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2711319 caatagcaaccaaggagacattctgattttcatgtgattgcctcaacaagcttataatcttctttttatcatcttctcttccaataatctctgattctaa 2711418  T
Q  411 cacaaaagaactactttcc 429  Q
    |||||||||||||||||||    
T  2711419 cacaaaagaactactttcc 2711437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 11 - 419
Target Start/End: Complemental strand, 2989717 - 2989309
Alignment:
Q  11 cacagatcaaataagtcctcaattgatcccacttttcaaaactctcattccaaacgtcgtcgagaagtaacaagtatctcttaccagttaaattggcttg 110  Q
    |||| |||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| ||||||||||||| ||||    
T  2989717 cacacatcaaataaggcctcaattgatcccacttttcaaaacactcattccaaacgtcgtcgagaactaacaagtatctctgaccagttaaattgacttg 2989618  T
Q  111 aatcatattttgtaattcttctaatgtcttgtttacaacactgtctttggttaacaacgcaaccaagttcttcagaatagttttgacatcaaagctatca 210  Q
    || |||| |||| || |||| ||||||||| |||||||||   |||||||||||  ||||||||| |||||||||||||||||||| ||||||| ||||     
T  2989617 aagcatactttgcaactcttgtaatgtcttatttacaacatcatctttggttaatgacgcaaccatgttcttcagaatagttttgaaatcaaagttatcc 2989518  T
Q  211 gagacacatacccacaaactcttttcaaaccaattttgcacttcagcatcattgtataccaattgagcaagagctgtctttcccaaaccaccaataccaa 310  Q
    |||||||||||||||| |  |||||||||| |||||| ||||||| |||| |||||||||| ||||||||||||||||||||||||||||||||||||||    
T  2989517 gagacacatacccacatatgcttttcaaacaaatttttcacttcaccatctttgtataccagttgagcaagagctgtctttcccaaaccaccaataccaa 2989418  T
Q  311 caatagcaaccaaggagacattctgattttcatgtgattgcctcaacaagcttataatcttctttttatcatcttctcttccaataatctctgattctaa 410  Q
    ||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| | |||| ||| |||||||||||||| ||||| ||||||||    
T  2989417 caatagcaaccaatgagacattctgatgttcatgtgattgcctcaacaagcttataatcgtgttttgatcttcttctcttccaatgatctcagattctaa 2989318  T
Q  411 cacaaaaga 419  Q
    |||| ||||    
T  2989317 cacataaga 2989309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 178 - 422
Target Start/End: Original strand, 3170170 - 3170414
Alignment:
Q  178 ttcttcagaatagttttgacatcaaagctatcagagacacatacccacaaactcttttcaaaccaattttgcacttcagcatcattgtataccaattgag 277  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||  |||||||||||  | |||   |||| |||||||||||||||||||||||    
T  3170170 ttcttcagaatagttttgacatcaaagttatcagagacacatacccacatcctcttttcaaaagactttgttacttgagcatcattgtataccaattgag 3170269  T
Q  278 caagagctgtctttcccaaaccaccaataccaacaatagcaaccaaggagacattctgattttcatgtgattgcctcaacaagcttataatcttcttttt 377  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  3170270 caagagctgtctttcccaaaccaccaataccaacaatagcaaccaaggagacattctgattttcatgtgattgcctcaacaagcttatgatcttcttttt 3170369  T
Q  378 atcatcttctcttccaataatctctgattctaacacaaaagaact 422  Q
    |||||||||||||||||| ||||||||||||||||||||||||||    
T  3170370 atcatcttctcttccaatgatctctgattctaacacaaaagaact 3170414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 177 - 421
Target Start/End: Complemental strand, 2980443 - 2980199
Alignment:
Q  177 gttcttcagaatagttttgacatcaaagctatcagagacacatacccacaaactcttttcaaaccaattttgcacttcagcatcattgtataccaattga 276  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||  |||||||||||| |||| ||||||||  |||| |||||||||||||||    
T  2980443 gttcttcagaatagttttgacatcaaagttatcagagacacatacccacattctcttttcaaacaaattctgcacttcttcatcgttgtataccaattga 2980344  T
Q  277 gcaagagctgtctttcccaaaccaccaataccaacaatagcaaccaaggagacattctgattttcatgtgattgcctcaacaagcttataatcttctttt 376  Q
    |||||||| |||||||||||||||||||||||||||||||||||||  || || |  |||||||||||||||||||||||||||||||||||||| ||||    
T  2980343 gcaagagccgtctttcccaaaccaccaataccaacaatagcaaccacagaaacttgttgattttcatgtgattgcctcaacaagcttataatcttgtttt 2980244  T
Q  377 tatcatcttctcttccaataatctctgattctaacacaaaagaac 421  Q
    ||||||||||||||||||| || | ||||||||||||| ||||||    
T  2980243 tatcatcttctcttccaatgatatttgattctaacacataagaac 2980199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 177 - 422
Target Start/End: Original strand, 3142065 - 3142310
Alignment:
Q  177 gttcttcagaatagttttgacatcaaagctatcagagacacatacccacaaactcttttcaaaccaattttgcacttcagcatcattgtataccaattga 276  Q
    |||||||| ||||||||||||||||||| ||||||||||||| ||||||| || |||||||||  |||||   |||||| ||||||||||||||||||||    
T  3142065 gttcttcacaatagttttgacatcaaagttatcagagacacaaacccacatacacttttcaaaataatttgttacttcaccatcattgtataccaattga 3142164  T
Q  277 gcaagagctgtctttcccaaaccaccaataccaacaatagcaaccaaggagacattctgattttcatgtgattgcctcaacaagcttataatcttctttt 376  Q
    | ||||||||||||||||||||||||||| ||||||||||||||||  ||||||   ||||||||||||||||||||||||| ||||| ||| |  ||||    
T  3142165 gaaagagctgtctttcccaaaccaccaatcccaacaatagcaaccacagagacacgttgattttcatgtgattgcctcaacatgcttacaatgtcatttt 3142264  T
Q  377 tatcatcttctcttccaataatctctgattctaacacaaaagaact 422  Q
    ||||||| ||||||||||| || ||||| |||||||||||||||||    
T  3142265 tatcatcatctcttccaatgatatctgactctaacacaaaagaact 3142310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 170 - 429
Target Start/End: Complemental strand, 3002543 - 3002284
Alignment:
Q  170 caaccaagttcttcagaatagttttgacatcaaagctatcagagacacatacccacaaactcttttcaaaccaattttgcacttcagcatcattgtatac 269  Q
    |||||| |||||||| ||||||||| ||||||||| | ||||||||||||||||||| |||  |||||||| |||||||||||||  ||||||| |||||    
T  3002543 caaccatgttcttcacaatagtttttacatcaaagttttcagagacacatacccacatacttatttcaaacaaattttgcacttctccatcattatatac 3002444  T
Q  270 caattgagcaagagctgtctttcccaaaccaccaataccaacaatagcaaccaaggagacattctgattttcatgtgattgcctcaacaagcttataatc 369  Q
    ||| |||||||||| ||||||||| ||||||||||| ||||||||||||| |||||||||||| || ||| |||||| ||| ||||| | |  |||||||    
T  3002443 caactgagcaagagttgtctttcctaaaccaccaatcccaacaatagcaatcaaggagacattttggtttccatgtggttgtctcaaaaggtgtataatc 3002344  T
Q  370 ttctttttatcatcttctcttccaataatctctgattctaacacaaaagaactactttcc 429  Q
    | ||||||||| |||||||||||||| || || ||||||||||| ||||||||| |||||    
T  3002343 tcctttttatcgtcttctcttccaatgatatccgattctaacaccaaagaactagtttcc 3002284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 177 - 423
Target Start/End: Original strand, 9850999 - 9851245
Alignment:
Q  177 gttcttcagaatagttttgacatcaaagctatcagagacacatacccacaaactcttttcaaaccaattttgcacttcagcatcattgtataccaattga 276  Q
    |||||||| |||||||||||| |||||| | |||||||||||||||||||  |||||||||||| |||||| ||||||    |||   || | || ||||    
T  9850999 gttcttcacaatagttttgacttcaaagttttcagagacacatacccacatcctcttttcaaacaaatttttcacttccatgtcacaataaatcatttga 9851098  T
Q  277 gcaagagctgtctttcccaaaccaccaataccaacaatagcaaccaaggagacattctgattttcatgtgattgcctcaacaagcttataatcttctttt 376  Q
    ||||||| ||||||||||||||||||||  ||||||| ||||| ||| |||||||| ||||||||||||| ||| ||||||||||||||||||||| |||    
T  9851099 gcaagagttgtctttcccaaaccaccaaatccaacaacagcaatcaaagagacattttgattttcatgtggttgtctcaacaagcttataatcttcattt 9851198  T
Q  377 tatcatcttctcttccaataatctctgattctaacacaaaagaacta 423  Q
    ||||||||||||||||||| || || ||||| |||||||||||||||    
T  9851199 tatcatcttctcttccaatgatatccgattccaacacaaaagaacta 9851245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 177 - 419
Target Start/End: Original strand, 2916030 - 2916272
Alignment:
Q  177 gttcttcagaatagttttgacatcaaagctatcagagacacatacccacaaactcttttcaaaccaattttgcacttcagcatcattgtataccaattga 276  Q
    |||||||| |||||||||||||||||||   ||||| ||||||||||| |   |||||||||||   |||||||||||  ||||||| ||||||| ||||    
T  2916030 gttcttcaaaatagttttgacatcaaagtcttcagacacacatacccatatcttcttttcaaactttttttgcacttccccatcattatataccagttga 2916129  T
Q  277 gcaagagctgtctttcccaaaccaccaataccaacaatagcaaccaaggagacattctgattttcatgtgattgcctcaacaagcttataatcttctttt 376  Q
    |||||||||||||| || ||||| |||||||||||||| |||| |||||||||||| || |||  ||||| ||||||||| ||  ||| |||||  ||||    
T  2916130 gcaagagctgtcttacctaaaccgccaataccaacaatggcaatcaaggagacattgtggtttctatgtggttgcctcaataaatttacaatctcttttt 2916229  T
Q  377 tatcatcttctcttccaataatctctgattctaacacaaaaga 419  Q
    ||| ||||||||| ||||| || ||||||||||| ||||||||    
T  2916230 tattatcttctctaccaatgatatctgattctaatacaaaaga 2916272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 190 - 328
Target Start/End: Original strand, 3173747 - 3173885
Alignment:
Q  190 gttttgacatcaaagctatcagagacacatacccacaaactcttttcaaaccaattttgcacttcagcatcattgtataccaattgagcaagagctgtct 289  Q
    ||||||||||||||| ||||||||||||| |||||||   || |||| ||   ||||||||||||  |||||||||||||||||||||||||||||||||    
T  3173747 gttttgacatcaaagttatcagagacacaaacccacatcgtcatttcgaaaagattttgcacttctccatcattgtataccaattgagcaagagctgtct 3173846  T
Q  290 ttcccaaaccaccaataccaacaatagcaaccaaggaga 328  Q
    | |||||||||||||| ||||| || ||||||| |||||    
T  3173847 tccccaaaccaccaattccaactattgcaaccagggaga 3173885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 11 - 103
Target Start/End: Original strand, 9850830 - 9850922
Alignment:
Q  11 cacagatcaaataagtcctcaattgatcccacttttcaaaactctcattccaaacgtcgtcgagaagtaacaagtatctcttaccagttaaat 103  Q
    |||| |||||||||||| |||||||| |||| |||||| ||||||||||||||| ||| || |||| ||||||||||||||||||||||||||    
T  9850830 cacacatcaaataagtcttcaattgagcccatttttcataactctcattccaaatgtcatctagaactaacaagtatctcttaccagttaaat 9850922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 178 - 329
Target Start/End: Original strand, 2911073 - 2911224
Alignment:
Q  178 ttcttcagaatagttttgacatcaaagctatcagagacacatacccacaaactcttttcaaaccaattttgcacttcagcatcattgtataccaattgag 277  Q
    ||||||| ||||||||||||||||||| | | ||||||||| ||||| |   ||||||| ||    ||||  |||||   ||||||||||||||| ||||    
T  2911073 ttcttcaaaatagttttgacatcaaagtttttagagacacacacccatatcttcttttcgaaaatgttttctacttccttatcattgtataccaactgag 2911172  T
Q  278 caagagctgtctttcccaaaccaccaataccaacaatagcaaccaaggagac 329  Q
    ||||||||||||| || ||||||||||||||||||||||| | |||||||||    
T  2911173 caagagctgtcttgcctaaaccaccaataccaacaatagctatcaaggagac 2911224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 178 - 419
Target Start/End: Original strand, 3282404 - 3282639
Alignment:
Q  178 ttcttcagaatagttttgacatcaaagctatcagagacacatacccacaaactcttttcaaaccaattttgcacttcagcatcattgtataccaattgag 277  Q
    ||||||| ||| || |||||||||||| ||| ||| | |||||||||||   ||||||||||   ||||||||||||  ||||||| || |  || ||||    
T  3282404 ttcttcacaatggtcttgacatcaaagttattagatatacatacccacattttcttttcaaaatgattttgcacttcctcatcattataaatgaactgag 3282503  T
Q  278 caagagctgtctttcccaaaccaccaataccaacaatagcaaccaaggagacattctgattttcatgtgattgcctcaacaagcttataatcttcttttt 377  Q
    |||||| |||||| || | ||| |||||||| ||||||||||   | ||||       |||| || ||| ||||||||| |   ||||||||| ||||||    
T  3282504 caagagttgtcttgcctatacctccaatacctacaatagcaattgatgaga------tatttccacgtggttgcctcaagagatttataatctccttttt 3282597  T
Q  378 atcatcttctcttccaataatctctgattctaacacaaaaga 419  Q
    |||||||||||||||| | || | ||||||||||| ||||||    
T  3282598 atcatcttctcttccattgatatttgattctaacaaaaaaga 3282639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 16 - 105
Target Start/End: Complemental strand, 2980607 - 2980518
Alignment:
Q  16 atcaaataagtcctcaattgatcccacttttcaaaactctcattccaaacgtcgtcgagaagtaacaagtatctcttaccagttaaattg 105  Q
    |||||||||||| ||||||||||||||||||||  |||||  ||||||| ||| || || | |||||||||| | |||||||||||||||    
T  2980607 atcaaataagtcgtcaattgatcccacttttcattactcttgttccaaatgtcatctaggactaacaagtattttttaccagttaaattg 2980518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 11 - 104
Target Start/End: Complemental strand, 3002705 - 3002612
Alignment:
Q  11 cacagatcaaataagtcctcaattgatcccacttttcaaaactctcattccaaacgtcgtcgagaagtaacaagtatctcttaccagttaaatt 104  Q
    |||| ||||||||||||||||||||| |||| |||||||||||||| ||||||| ||| ||||| | ||| ||  ||||||| ||| |||||||    
T  3002705 cacacatcaaataagtcctcaattgagcccatttttcaaaactctcgttccaaatgtcatcgaggattaagaaaaatctcttcccatttaaatt 3002612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 16 - 100
Target Start/End: Original strand, 3141901 - 3141985
Alignment:
Q  16 atcaaataagtcctcaattgatcccacttttcaaaactctcattccaaacgtcgtcgagaagtaacaagtatctcttaccagtta 100  Q
    ||||||||||||||||||||| |||| ||| |||||||||| ||||||| ||| || || | |||||||||| | ||||||||||    
T  3141901 atcaaataagtcctcaattgagcccattttccaaaactctcgttccaaatgtcatctaggactaacaagtattttttaccagtta 3141985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 178 - 419
Target Start/End: Complemental strand, 13791490 - 13791255
Alignment:
Q  178 ttcttcagaatagttttgacatcaaagctatcagagacacatacccacaaactcttttcaaaccaattttgcacttcagcatcattgtataccaattgag 277  Q
    ||||||| ||| || |||||||||||| ||  ||| |||||||||||||   ||||||||||    |||||||||||  ||||||| ||||| ||| |||    
T  13791490 ttcttcacaatggtcttgacatcaaagttactagatacacatacccacattttcttttcaaaatgcttttgcacttccacatcattatatacgaatcgag 13791391  T
Q  278 caagagctgtctttcccaaaccaccaataccaacaatagcaaccaaggagacattctgattttcatgtgattgcctcaacaagcttataatcttcttttt 377  Q
    |||||| |||||| || | ||| |||||||| |||||| |||   | ||||       |||| |||||| |||  |||| |   ||||||||| ||||||    
T  13791390 caagagttgtcttgccaatacctccaatacctacaataacaattgacgaga------tatttccatgtggttgtgtcaagagatttataatctccttttt 13791297  T
Q  378 atcatcttctcttccaataatctctgattctaacacaaaaga 419  Q
    ||||||||||||||| || || | ||||||||||| ||||||    
T  13791296 atcatcttctcttcccatgatgtttgattctaacaaaaaaga 13791255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 11 - 101
Target Start/End: Original strand, 3170000 - 3170090
Alignment:
Q  11 cacagatcaaataagtcctcaattgatcccacttttcaaaactctcattccaaacgtcgtcgagaagtaacaagtatctcttaccagttaa 101  Q
    |||| |||||||||||| |||||||| |||| ||||||||||| || |||||||  || || |||| ||||| ||||||| || |||||||    
T  3170000 cacacatcaaataagtcttcaattgagcccatttttcaaaactgtcgttccaaatatcatctagaactaacaggtatctcatagcagttaa 3170090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 11 - 419
Target Start/End: Complemental strand, 18356117 - 18355709
Alignment:
Q  11 cacagatcaaataagtcctcaattgatcccacttttcaaaactctcattccaaacgtcgtcgagaagtaacaagtatctcttaccagttaaattggcttg 110  Q
    |||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||    
T  18356117 cacacatcaaataaggcctcaattgatcccacttttcaaaactctcattccaaacgtcgtcgagaactaacaagtatctcttaccagttaaattgacttg 18356018  T
Q  111 aatcatattttgtaattcttctaatgtcttgtttacaacactgtctttggttaacaacgcaaccaagttcttcagaatagttttgacatcaaagctatca 210  Q
    || |||| |||| || |||||||||||||| ||||||||    ||||||||||| |||||||||| |||||||||||||||||||| ||||||| ||||     
T  18356017 aagcatactttgcaactcttctaatgtcttatttacaacgtcctctttggttaataacgcaaccatgttcttcagaatagttttgaaatcaaagttatct 18355918  T
Q  211 gagacacatacccacaaactcttttcaaaccaattttgcacttcagcatcattgtataccaattgagcaagagctgtctttcccaaaccaccaataccaa 310  Q
    |||||||||||||||| |  |||||||||| |||||| ||||||| |||| |||||||||| ||||||||||||||||||||||||||||||||||||||    
T  18355917 gagacacatacccacatatgcttttcaaacaaatttttcacttcaccatctttgtataccagttgagcaagagctgtctttcccaaaccaccaataccaa 18355818  T
Q  311 caatagcaaccaaggagacattctgattttcatgtgattgcctcaacaagcttataatcttctttttatcatcttctcttccaataatctctgattctaa 410  Q
    ||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| ||||| ||||||||    
T  18355817 caatagcaaccaatgagacattctgatgttcatgtgattgcctcaacaagcttataatcttgtttttatcttcttctcttccaatgatctcagattctaa 18355718  T
Q  411 cacaaaaga 419  Q
    |||| ||||    
T  18355717 cacataaga 18355709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 191; Significance: 1e-103; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 11 - 429
Target Start/End: Original strand, 10755390 - 10755811
Alignment:
Q  11 cacagatcaaataagtcctcaattgatcccacttttcaaaactctcattccaaacgtcgtcgagaagtaacaagtatctcttaccagttaaattggcttg 110  Q
    |||| |||||||||||| | || |||||||||||||||||||||| |||||||||||| || ||||||||||||||||||||||||||||||||  |  |    
T  10755390 cacacatcaaataagtcattaactgatcccacttttcaaaactcttattccaaacgtcatccagaagtaacaagtatctcttaccagttaaattttcacg 10755489  T
Q  111 aatcatattttgtaattcttctaatg-tcttgttta--caacactgtctttggttaacaacgcaaccaagttcttcagaatagttttgacatcaaagcta 207  Q
    || ||||||||| || |  || |||| |  ||| |   |||   |||  ||||||||  || | | || ||||||||||||||||||||| |||||| ||    
T  10755490 aagcatattttgcaagttgtccaatgataatgtgtcatcaattttgttcttggttaatgactccaacatgttcttcagaatagttttgacgtcaaagtta 10755589  T
Q  208 tcagagacacatacccacaaactcttttcaaaccaattttgcacttcagcatcattgtataccaattgagcaagagctgtctttcccaaaccaccaatac 307  Q
    ||||||||||||||||||| |||||| |||||| ||| |||||||||   ||| ||||||||||||||||||||||| ||||| || |||||||||||||    
T  10755590 tcagagacacatacccacatactcttctcaaacaaatcttgcacttctctatcgttgtataccaattgagcaagagccgtcttccctaaaccaccaatac 10755689  T
Q  308 caacaatagcaaccaaggagacattctgattttcatgtgattgcctcaacaagcttataatcttctttttatcatcttctcttccaataatctctgattc 407  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| ||||||||||||| |||||||||||| || | ||||||    
T  10755690 caacaatagcaaccaaggagacattctgattttcatgtgattgcatcaacaaacttataattttctttttatcatattctcttccaatgatatttgattc 10755789  T
Q  408 taacacaaaagaactactttcc 429  Q
    |||||||||||||||| |||||    
T  10755790 taacacaaaagaactagtttcc 10755811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0065 (Bit Score: 158; Significance: 6e-84; HSPs: 4)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 177 - 422
Target Start/End: Complemental strand, 45670 - 45425
Alignment:
Q  177 gttcttcagaatagttttgacatcaaagctatcagagacacatacccacaaactcttttcaaaccaattttgcacttcagcatcattgtataccaattga 276  Q
    |||||| ||||||||||||||||||||| ||| |||||||||||||||||  |||||||||||  | |||   |||||| ||||||||||||||||||||    
T  45670 gttctttagaatagttttgacatcaaagttattagagacacatacccacatcctcttttcaaaagactttgttacttcaccatcattgtataccaattga 45571  T
Q  277 gcaagagctgtctttcccaaaccaccaataccaacaatagcaaccaaggagacattctgattttcatgtgattgcctcaacaagcttataatcttctttt 376  Q
    ||||||||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||     
T  45570 gcaagagctgtctttcccaaaccgccaatccctacaatagcaaccaaggagacattctgattttcatgtgattgcctcaacaagcttatgatcttatttc 45471  T
Q  377 tatcatcttctcttccaataatctctgattctaacacaaaagaact 422  Q
    |||||||||||||||| || || ||||||||| |||||||||||||    
T  45470 tatcatcttctcttccgatgatatctgattctgacacaaaagaact 45425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0065; HSP #2
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 186 - 430
Target Start/End: Complemental strand, 50830 - 50587
Alignment:
Q  186 aatagttttgacatcaaagctatcagagacacatacccacaaactcttttcaaaccaattttgcacttcagcatcattgtataccaattgagcaagagct 285  Q
    ||||||||||||||| | | ||||||||||||| ||||||| ||||||| |||| |  ||||  |||||| | |||||||| || ||||||||||||| |    
T  50830 aatagttttgacatcca-gttatcagagacacacacccacatactctttccaaaactcttttttacttcaccgtcattgtaaactaattgagcaagagtt 50732  T
Q  286 gtctttcccaaaccaccaataccaacaatagcaaccaaggagacattctgattttcatgtgattgcctcaacaagcttataatcttctttttatcatctt 385  Q
    |||||||||||||||||||| ||||||||||||||||  || |||| ||| |||||||||| || |||||||||||||| |||||  |||| ||| ||||    
T  50731 gtctttcccaaaccaccaatcccaacaatagcaaccacagaaacatgctggttttcatgtggttacctcaacaagcttaaaatctcattttaatcgtctt 50632  T
Q  386 ctcttccaataatctctgattctaacacaaaagaactactttcct 430  Q
    ||||||| || || || ||||| ||||||||||||||| ||||||    
T  50631 ctcttccgatgatatcagattcgaacacaaaagaactattttcct 50587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0065; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 11 - 105
Target Start/End: Complemental strand, 45842 - 45748
Alignment:
Q  11 cacagatcaaataagtcctcaattgatcccacttttcaaaactctcattccaaacgtcgtcgagaagtaacaagtatctcttaccagttaaattg 105  Q
    |||| |||||||||||| ||||||||||||||||||| |||||||||||||||||||| || ||||||| |||||||||||||||||||||||||    
T  45842 cacacatcaaataagtcttcaattgatcccacttttctaaactctcattccaaacgtcatcaagaagtagcaagtatctcttaccagttaaattg 45748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0065; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 19 - 104
Target Start/End: Complemental strand, 51000 - 50915
Alignment:
Q  19 aaataagtcctcaattgatcccacttttcaaaactctcattccaaacgtcgtcgagaagtaacaagtatctcttaccagttaaatt 104  Q
    ||||||||||||||||||   || |||||||||||||| ||||||| ||| || || | |||||||||||||||||| ||||||||    
T  51000 aaataagtcctcaattgagaacatttttcaaaactctcgttccaaatgtcatctaggactaacaagtatctcttacctgttaaatt 50915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 124; Significance: 1e-63; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 199 - 422
Target Start/End: Original strand, 3919073 - 3919296
Alignment:
Q  199 tcaaagctatcagagacacatacccacaaactcttttcaaaccaattttgcacttcagcatcattgtataccaattgagcaagagctgtctttcccaaac 298  Q
    |||||| |||| |||||||||||||||| |||| |||||||| | |||||||||||  |||||||||||| |||||||||||||| ||||||||| ||||    
T  3919073 tcaaagttatcggagacacatacccacatactcctttcaaacgagttttgcacttccacatcattgtatatcaattgagcaagagttgtctttcctaaac 3919172  T
Q  299 caccaataccaacaatagcaaccaaggagacattctgattttcatgtgattgcctcaacaagcttataatcttctttttatcatcttctcttccaataat 398  Q
    ||||||| ||||||||| ||||||   ||||||| |||||| |||||| |||| ||||||||||||||||||||||||||||||||||||||||||| ||    
T  3919173 caccaatcccaacaataccaaccacaaagacattttgatttccatgtggttgcatcaacaagcttataatcttctttttatcatcttctcttccaatgat 3919272  T
Q  399 ctctgattctaacacaaaagaact 422  Q
     || ||||||||| |||| |||||    
T  3919273 atccgattctaacgcaaatgaact 3919296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 11 - 122
Target Start/End: Original strand, 3918882 - 3918993
Alignment:
Q  11 cacagatcaaataagtcctcaattgatcccacttttcaaaactctcattccaaacgtcgtcgagaagtaacaagtatctcttaccagttaaattggcttg 110  Q
    |||| |||||| |||||||||| ||| |||| |||||||||||||| ||||||| ||| || | || |||||||||||||||||| ||||||||| |  |    
T  3918882 cacacatcaaaaaagtcctcaagtgagcccatttttcaaaactctcgttccaaatgtcatccaaaactaacaagtatctcttacctgttaaattgtcacg 3918981  T
Q  111 aatcatattttg 122  Q
    || |||||||||    
T  3918982 aaacatattttg 3918993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 249 - 319
Target Start/End: Complemental strand, 32408720 - 32408650
Alignment:
Q  249 cacttcagcatcattgtataccaattgagcaagagctgtctttcccaaaccaccaataccaacaatagcaa 319  Q
    ||||||| ||||||| || |||||||| ||||| || ||||||||||| || || |||||||||| |||||    
T  32408720 cacttcatcatcattataaaccaattgcgcaagcgccgtctttcccaacccgcccataccaacaacagcaa 32408650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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