View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11142_low_22 (Length: 442)
Name: NF11142_low_22
Description: NF11142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11142_low_22 |
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Alignment Details
Target: chr8 (Bit Score: 98; Significance: 4e-48; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 266 - 387
Target Start/End: Original strand, 27803278 - 27803399
Alignment:
| Q |
266 |
ttgatcatctttatttatatcaaacacatttattttctgaatagcatttgaaaaatcttaactccagcggtttaaaactgggacatttataaggtggccc |
365 |
Q |
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| T |
27803278 |
ttgatcatctttatttatatcaaacacatttattttctgaatggcatttgaaaaatcttaactccggcagtttaaaactgggacatttataagatgcccc |
27803377 |
T |
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| Q |
366 |
ttgtcttaattttgtaaggttt |
387 |
Q |
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| T |
27803378 |
ttgttttaattttgtaaggttt |
27803399 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 373 - 431
Target Start/End: Original strand, 27803414 - 27803472
Alignment:
| Q |
373 |
aattttgtaaggtttatattcatataacttgtcttattcaaaactaaaactacatgatg |
431 |
Q |
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| T |
27803414 |
aattttgtaaggtttatactcatataacttgtcttattcgaaattaaaattacatgatg |
27803472 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 341 - 410
Target Start/End: Original strand, 27799966 - 27800035
Alignment:
| Q |
341 |
aactgggacatttataaggtggcccttgtcttaattttgtaaggtttatattcatataacttgtcttatt |
410 |
Q |
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| T |
27799966 |
aactgggacgtttatagggtgtcccctgttataattttgtaacgtttacactcatataacttgtcttatt |
27800035 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 19 - 79
Target Start/End: Original strand, 27802816 - 27802877
Alignment:
| Q |
19 |
atacctaagaatacaacttaacatcnnnnnnn-atttgtgttctcctccttaagtatttcac |
79 |
Q |
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| T |
27802816 |
atacctaagaatacaacttaacatcttttttttatttgtgttctcctccttaagtatttcac |
27802877 |
T |
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