View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11142_low_25 (Length: 406)
Name: NF11142_low_25
Description: NF11142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11142_low_25 |
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| [»] chr8 (2 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 390; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 9 - 406
Target Start/End: Complemental strand, 20215907 - 20215510
Alignment:
| Q |
9 |
atggacatcacagctgccacatcgtgcagcggctataggggatataaatccacttttttatcagttagtttctgctatatgctttgtctgactttagtaa |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20215907 |
atggacatcacagctgccacatcgtgcagcggctataggggatataaatccacttttttatcagttagtttctgctatatgctttgtctgactttagtaa |
20215808 |
T |
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| Q |
109 |
ttttgatacttttacagctgtcaggaatactgggaacaaagacttcaatcagagagggtagagaggattaagcaaataaaggaacactgggattcacagt |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20215807 |
ttttgatacttttacagctgtcaggaatactgggaacaaagacttcaatcagagagggtagagaggattaagcaaataaaggaacactgggattcacagt |
20215708 |
T |
|
| Q |
209 |
gtagagctttcatgggcgtctaagaagatcatcagctttattagtttctttagtagatcatgagctttcatacacatttgtttgattgtcattttgtatg |
308 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20215707 |
gtagagctttcatgggcgtctaagaagatcaccagctttattagtttctttagtagatcatgagctttcatacacatttgtttgattgtcattttgtatg |
20215608 |
T |
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| Q |
309 |
ttataataattaatggtagcggtagcgcaactgcttgtaaaatatctatatggttggaatgtgataaacaagatttgttatctataacctattctgcc |
406 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20215607 |
ttataataattaatcgtagcggtagcgcaactgcttgtaaaatatctatatggttggaatgtgataaacaagatttgttatctataacctattctgcc |
20215510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 9 - 406
Target Start/End: Complemental strand, 20235505 - 20235108
Alignment:
| Q |
9 |
atggacatcacagctgccacatcgtgcagcggctataggggatataaatccacttttttatcagttagtttctgctatatgctttgtctgactttagtaa |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20235505 |
atggacatcacagctgccacatcgtgcagcggctataggggatataaatccacttttttatcagttagtttctgctatatgctttgtctgactttagtaa |
20235406 |
T |
|
| Q |
109 |
ttttgatacttttacagctgtcaggaatactgggaacaaagacttcaatcagagagggtagagaggattaagcaaataaaggaacactgggattcacagt |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20235405 |
ttttgatacttttacagctgtcaggaatactgggaacaaagacttcaatcagagagggtagagaggattaagcaaataaaggaacactgggattcacagt |
20235306 |
T |
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| Q |
209 |
gtagagctttcatgggcgtctaagaagatcatcagctttattagtttctttagtagatcatgagctttcatacacatttgtttgattgtcattttgtatg |
308 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20235305 |
gtagagctttcatgggcgtctaagaagatcaccagctttattagtttctttagtagatcatgagctttcatacacatttgtttgattgtcattttgtatg |
20235206 |
T |
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| Q |
309 |
ttataataattaatggtagcggtagcgcaactgcttgtaaaatatctatatggttggaatgtgataaacaagatttgttatctataacctattctgcc |
406 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20235205 |
ttataataattaatcgtagcggtagcgcaactgcttgtaaaatatctatatggttggaatgtgataaacaagatttgttatctataacctattctgcc |
20235108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 390; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 9 - 406
Target Start/End: Complemental strand, 44300419 - 44300022
Alignment:
| Q |
9 |
atggacatcacagctgccacatcgtgcagcggctataggggatataaatccacttttttatcagttagtttctgctatatgctttgtctgactttagtaa |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44300419 |
atggacatcacagctgccacatcgtgcagcggctataggggatataaatccacttttttatcagttagtttctgctatatgctttgtctgactttagtaa |
44300320 |
T |
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| Q |
109 |
ttttgatacttttacagctgtcaggaatactgggaacaaagacttcaatcagagagggtagagaggattaagcaaataaaggaacactgggattcacagt |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44300319 |
ttttgatacttttacagctgtcaggaatactgggaacaaagacttcaatcagagagggtagagaggattaagcaaataaaggaacactgggattcacagt |
44300220 |
T |
|
| Q |
209 |
gtagagctttcatgggcgtctaagaagatcatcagctttattagtttctttagtagatcatgagctttcatacacatttgtttgattgtcattttgtatg |
308 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44300219 |
gtagagctttcatgggcgtctaagaagatcaccagctttattagtttctttagtagatcatgagctttcatacacatttgtttgattgtcattttgtatg |
44300120 |
T |
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| Q |
309 |
ttataataattaatggtagcggtagcgcaactgcttgtaaaatatctatatggttggaatgtgataaacaagatttgttatctataacctattctgcc |
406 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44300119 |
ttataataattaatcgtagcggtagcgcaactgcttgtaaaatatctatatggttggaatgtgataaacaagatttgttatctataacctattctgcc |
44300022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 119 - 231
Target Start/End: Original strand, 39655677 - 39655789
Alignment:
| Q |
119 |
tttacagctgtcaggaatactgggaacaaagacttcaatcagagagggtagagaggattaagcaaataaaggaacactgggattcacagtgtagagcttt |
218 |
Q |
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|||||||||| |||| |||||||| |||||||||| || || ||||||||| | |||||| |||||| |||||||| | ||||||||||| || |
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| T |
39655677 |
tttacagctgcaaggagtactgggaggaaagacttcagatggaaagagtagagagggtcaagcaagcaaaggagcactgggaaacgcagtgtagagcatt |
39655776 |
T |
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| Q |
219 |
catgggcgtctaa |
231 |
Q |
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||||||| ||||| |
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| T |
39655777 |
catgggcatctaa |
39655789 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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