View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11142_low_27 (Length: 402)

Name: NF11142_low_27

Description: NF11142

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF11142_low_27

[»] chr6 (6 HSPs)

Alignment Details

Target: chr6 (Bit Score: 281; Significance: 1e-157; HSPs: 6)

Name: chr6

Description:

Target: chr6; HSP #1

Raw Score: 281; E-Value: 1e-157

Query Start/End: Original strand, 14 - 402

Target Start/End: Complemental strand, 32371434 - 32371039

Alignment:

Q	14	agatatcacattcaaatctaagaaacagtctccccactttcagataagtgattgatnnnnnnnn--gtacattgatttacaattaacaaacaccatttac	111	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	32371434	agatatcacattcaaatctaagaaacagtctccccactttcggataagtgattgataaaaaaaaaagtacattgatttacaaattacaaacaccatttac	32371335	T

Q	112	gaactcaaacgactgctcaaatcaaactcaagcgatatgaaatgaagcctacaat-----caacccttcatcgggaactgaatgtatctgatacaaaaca	206	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	32371334	gaactcaaacgactgctcaaatcgaactcaaacgatatgaaatgaagcctacaatacaatcaactcttcatcaggaactgaatgtatctgatacaaaaca	32371235	T

Q	207	cataaaaaacacgtatttgttagacacaagtgtagaatgaacatcctgaaaaattaactaaatccaagataagttccgagaagtataacttcttctttca	306	Q
		\|\| \|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\| \|\|\|\|
T	32371234	cacaaaaaacacgtctttgttagacacaagtgtagaatgaacatcctgggaaattaactaaatccaagataagttccgagaagtataatttcttcattca	32371135	T

Q	307	gaaacactcacacatgtggttatactctttttctagtcaacactcaacatacagaaacatgttcttgattttatattccaaataaaattgtagtac	402	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\| \|\|\|\|\|\|
T	32371134	gaaacactcacacatgtggttatactctttttctagtcaacactcaacatacagaaacatgttcttgattttatattccaaataacattatagtac	32371039	T

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Target: chr6; HSP #2

Raw Score: 73; E-Value: 3e-33

Query Start/End: Original strand, 244 - 348

Target Start/End: Complemental strand, 32356195 - 32356091

Alignment:

Q	244	tgaacatcctgaaaaattaactaaatccaagataagttccgagaagtataacttcttctttcagaaacactcacacatgtggttatactctttttctagt	343	Q
		\|\|\|\|\|\| \| \|\|\| \|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	32356195	tgaacaccttgagaaattaactcaatccaatataagttccgagaagtataacttcttcattcagaaatactcacacatgtggtaatactctttttctagt	32356096	T

Q	344	caaca	348	Q
		\|\|\|\|\|
T	32356095	caaca	32356091	T

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Target: chr6; HSP #3

Raw Score: 52; E-Value: 1e-20

Query Start/End: Original strand, 130 - 232

Target Start/End: Original strand, 32366146 - 32366253

Alignment:

Q	130	aaatcaaactcaagcgatatgaaatgaagcctacaat-----caacccttcatcgggaactgaatgtatctgatacaaaacacataaaaaacacgtattt	224	Q
		\|\|\|\|\| \|\|\|\|\|\|\| \| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\| \|\|\|\|\| \|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\| \|\|\|
T	32366146	aaatcgaactcaaacaatatgaaatgaagcctacaatacaatcaactcttcaccgggaactgattgtatccgatacaaaacacacaaaaaacacgtcttt	32366245	T

Q	225	gttagaca	232	Q
		\|\|\|\|\|\|\|\|
T	32366246	gttagaca	32366253	T

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Target: chr6; HSP #4

Raw Score: 45; E-Value: 2e-16

Query Start/End: Original strand, 24 - 68

Target Start/End: Original strand, 32365869 - 32365913

Alignment:

Q	24	ttcaaatctaagaaacagtctccccactttcagataagtgattga	68	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	32365869	ttcaaatctaagaaacagtctccccactttcagataagtgattga	32365913	T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5

Raw Score: 41; E-Value: 0.00000000000004

Query Start/End: Original strand, 350 - 398

Target Start/End: Complemental strand, 32370743 - 32370695

Alignment:

Q	350	tcaacatacagaaacatgttcttgattttatattccaaataaaattgta	398	Q
		\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|
T	32370743	tcaacatacaaaaacatgttcttgattttatattccaaataacattgta	32370695	T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6

Raw Score: 30; E-Value: 0.0000001

Query Start/End: Original strand, 23 - 52

Target Start/End: Complemental strand, 32357003 - 32356974

Alignment:

Q	23	attcaaatctaagaaacagtctccccactt	52	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	32357003	attcaaatctaagaaacagtctccccactt	32356974	T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]