View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11142_low_28 (Length: 389)
Name: NF11142_low_28
Description: NF11142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11142_low_28 |
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Alignment Details
Target: chr4 (Bit Score: 358; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 19 - 384
Target Start/End: Complemental strand, 49035794 - 49035429
Alignment:
| Q |
19 |
aacatgcctgaggtgtaccaataagtggaaccattatctctggtagaactacaatactattgcgactcactgaaacagcggcttggaagattgcacgagc |
118 |
Q |
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| T |
49035794 |
aacatgcctgaggtgtaccaataagtggaaccattatctctggtagaactacaatactattgcgactcactgaaacagcggcttggaagattgcacgagc |
49035695 |
T |
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| Q |
119 |
ctgcatctcagtcaattctggatatgatattcccagcctgttcacatgatttcaaattgtcaaacatcagtaaatcataggataccgagtttgattccta |
218 |
Q |
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| T |
49035694 |
ctgcatctcagtcaattctggatatgatattcccagcctgttcacatgatttcaaattgtcaaacatcagtaaatcataggataccgagtttgattccta |
49035595 |
T |
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| Q |
219 |
ctgataaattatgaacttggaatttccaaactaaacatcagtcatgtgatagttatttgttacgcgcaagcatcatattaaaaggacgacaaacctgcag |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
49035594 |
ctgataaattatgaacttggaatttccaaactaaacatcagtcatgtgatagttatttgttacgcgcaagcatcatattaaaaggaggacaaacctgcag |
49035495 |
T |
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| Q |
319 |
ccgcgaaaaccaagcatgggattaacttcagagagtttttcaatcctagagaatatctctgcttct |
384 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
49035494 |
ccgcgaaaaccaagcatgggattaacttcagagagtttttcaatcctagagaatatttctgcttct |
49035429 |
T |
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