View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11142_low_29 (Length: 389)
Name: NF11142_low_29
Description: NF11142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11142_low_29 |
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Alignment Details
Target: chr3 (Bit Score: 195; Significance: 1e-106; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 18 - 259
Target Start/End: Original strand, 30356482 - 30356720
Alignment:
| Q |
18 |
aaggtggtggggccaacgctcgggtttgtggcgtttgtcgcggcggcggtggtggagtggccggttggggcccttgtttatatctttaagcataagaaag |
117 |
Q |
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| T |
30356482 |
aaggtggtgggaccaacgctcgggtttgtggcgtttgtcgcggcagcggtggtggagtggccggttggggcccttgtttatatctttaagcataagaagg |
30356581 |
T |
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| Q |
118 |
gtcgcagaatcatgggtcatcctgccactgttgtatacccaaaagtcaacagagcaatccccatatgattaacttcattctataaattactagtatttca |
217 |
Q |
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| T |
30356582 |
gtcgcagaatcatgggtcatcctgccactgttgtatacccaaaagtcaacagagccatccccatatgattaacttcattctataaattagttgtattt-- |
30356679 |
T |
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| Q |
218 |
attcgtgtcttttaacccaatttcccatttcatgttataaaa |
259 |
Q |
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| T |
30356680 |
att-ttgtcttttaacccaatttcccatttcatgttataaaa |
30356720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 18 - 324
Target Start/End: Original strand, 30361079 - 30361388
Alignment:
| Q |
18 |
aaggtggtggggccaacgctcgggtttgtggcgtttgtcgcggcggcggtggtggagtggccggttggggcccttgtttatatctttaagcataagaaag |
117 |
Q |
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| T |
30361079 |
aaggtggtggggccaacgatcggattcgtggcgtttgtcgtggcgggggtggtggaatggccggttggggctcttgtttatatctttaagcataggaagg |
30361178 |
T |
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| Q |
118 |
gtcgcagaatcatgggtcatcctgccactgttgtatacccaaaagtcaacagagcaatccccatatgattaacttcattctataaattactagtatttca |
217 |
Q |
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| T |
30361179 |
gtcgcagaatcatgggtcatcctgccaccgttgtatacccaaaagtcaccagagccatccccatatgattaacttcattctataaattagttgtattt-- |
30361276 |
T |
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| Q |
218 |
attcgtgtcttttaacccaatttcccatttcatgttataaaa--atgtactac-tccatatagttccgatgcacgagcatcataa--tgtgggtacatat |
312 |
Q |
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| T |
30361277 |
atttttgtcttgttatccaatttcccatttcatgttataatattatgtactccatccatatagttttgatgtacgagcatcataatgtgtgggaacatat |
30361376 |
T |
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| Q |
313 |
gtattttgttta |
324 |
Q |
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||||||||||| |
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| T |
30361377 |
atattttgttta |
30361388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 257 - 324
Target Start/End: Original strand, 30356751 - 30356818
Alignment:
| Q |
257 |
aaaatgtactactccatatagttccgatgcacgagcatcataatgtgggtacatatgtattttgttta |
324 |
Q |
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| T |
30356751 |
aaaatgtactactccatatagttccgatgcacgagtatcataatgtgggtacatatgtattttgttta |
30356818 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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