View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11142_low_3 (Length: 622)

Name: NF11142_low_3
Description: NF11142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11142_low_3
NF11142_low_3
[»] chr8 (12 HSPs)
chr8 (259-601)||(11949636-11949972)
chr8 (12-271)||(11949339-11949597)
chr8 (54-182)||(12482729-12482857)
chr8 (12-175)||(12289395-12289558)
chr8 (12-181)||(12483007-12483176)
chr8 (44-176)||(2105864-2105994)
chr8 (89-180)||(12670497-12670588)
chr8 (333-566)||(10764128-10764362)
chr8 (104-182)||(939435-939513)
chr8 (19-141)||(11949096-11949223)
chr8 (19-58)||(12479347-12479386)
chr8 (12-47)||(12670444-12670479)
[»] chr7 (4 HSPs)
chr7 (333-481)||(5586415-5586563)
chr7 (333-481)||(5591376-5591524)
chr7 (103-177)||(25796171-25796245)
chr7 (114-167)||(45343081-45343134)
[»] chr3 (10 HSPs)
chr3 (33-182)||(3701664-3701812)
chr3 (33-182)||(3712964-3713112)
chr3 (14-180)||(3705416-3705581)
chr3 (103-182)||(3707923-3708002)
chr3 (103-182)||(3719483-3719562)
chr3 (103-177)||(32775269-32775343)
chr3 (103-177)||(32814955-32815029)
chr3 (103-176)||(26807449-26807522)
chr3 (103-178)||(32772689-32772764)
chr3 (114-167)||(41845773-41845826)
[»] chr5 (5 HSPs)
chr5 (19-176)||(38327773-38327928)
chr5 (102-178)||(31965397-31965473)
chr5 (104-177)||(8219733-8219806)
chr5 (104-176)||(38322601-38322673)
chr5 (333-566)||(38324640-38324874)
[»] chr1 (5 HSPs)
chr1 (104-181)||(27981044-27981121)
chr1 (103-176)||(43849047-43849120)
chr1 (103-175)||(30953117-30953189)
chr1 (114-167)||(39755137-39755190)
chr1 (114-167)||(39760491-39760544)
[»] chr4 (4 HSPs)
chr4 (104-178)||(26741372-26741446)
chr4 (103-176)||(19185991-19186064)
chr4 (104-175)||(30161835-30161906)
chr4 (104-175)||(51386264-51386335)
[»] chr6 (1 HSPs)
chr6 (104-176)||(21882907-21882979)
[»] chr2 (4 HSPs)
chr2 (104-176)||(4767493-4767565)
chr2 (104-176)||(38551328-38551400)
chr2 (114-167)||(14428572-14428625)
chr2 (114-167)||(34962092-34962145)


Alignment Details
Target: chr8 (Bit Score: 246; Significance: 1e-136; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 259 - 601
Target Start/End: Original strand, 11949636 - 11949972
Alignment:
Q  259 attcccaattcttaaccatgagactagaaatgtgtctcatacaccaagaacattggttgaaggttaaggaacttagcctcagtatgagtcattttcaaag 358  Q
    |||||||||||||||||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||||||| |||||||||||||    
T  11949636 attcccaattcttaaccatgagactagaaatgtgtctcataca---------ttggttgaaggttaaggaacttagcctcagtatgggtcattttcaaag 11949726  T
Q  359 tagaagattatacttagcaataccttccataacctaaggtgcatccaaagcattaaaagtatcattcacaatgttatgttcatgtcttgtccacttgtaa 458  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  11949727 tagaagattatacttagcaataccttccataacctaaggtgcatccaaagcattaaaagtatcattcacaatgtcatgttcatgtcttgtccacttgtaa 11949826  T
Q  459 aattgcatatgttaatctaacacaatt---nnnnnnnnnntcacaaccttgtcaacaagttcctttaaaagtcttctatcaagaccttcaggaatcattg 555  Q
    |||||||||||||||||||||||||||             ||||||||| |||||||| |||||||||||||||| |||||||||||||| |||||||||    
T  11949827 aattgcatatgttaatctaacacaattaaaaaaaaaaaaatcacaacctcgtcaacaaattcctttaaaagtcttttatcaagaccttcaagaatcattg 11949926  T
Q  556 gttgaaggtgagaaatttcacacgttcacctgttgattcatctatg 601  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  11949927 gttgaaggtgagaaatttcacacgttcacctgttgattcatctatg 11949972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 12 - 271
Target Start/End: Original strand, 11949339 - 11949597
Alignment:
Q  12 aggagcacagaggtatatttatcatccagtttttcagaataggtgatgttacccaacaccacaaacattatcatcatagctcatccaggggttgcaccag 111  Q
    |||||| ||||||||||||||||||| |||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| || ||||||||||||    
T  11949339 aggagctcagaggtatatttatcatcaagtttttcaggatagg-gatgttacccaacaccacaaacattatcatcatagctcattcaagggttgcaccag 11949437  T
Q  112 ccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgctttgttgtgtggttgaggatgttgttatatatttatc 211  Q
    || ||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |    
T  11949438 ccaggaattgaacccgggtctgtagcgtggcagggtactattctaccactagaccactggtgctttgctgtgtggttgaggatgttgttatatatttaac 11949537  T
Q  212 attaaacacgttgccgacaaaaagttaaggtaaagccaaacataagtattcccaattctt 271  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  11949538 attaaacacgttgtcgacaaaaagttaaggtaaagccaaacataagtattcccaattctt 11949597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 54 - 182
Target Start/End: Original strand, 12482729 - 12482857
Alignment:
Q  54 gtgatgttacccaacaccacaaacattatcatcatagctcatccaggggttgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactatt 153  Q
    |||||||||||||||||||||  ||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||    
T  12482729 gtgatgttacccaacaccacatgcattatcatcatagctcattcaggggttgcaccagccaggaattgaacccgggtctgtaccatggcagggtactatt 12482828  T
Q  154 ctaccactagaccactggtgctttgttgt 182  Q
    |||||||||||||||||||||||||||||    
T  12482829 ctaccactagaccactggtgctttgttgt 12482857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 12 - 175
Target Start/End: Complemental strand, 12289558 - 12289395
Alignment:
Q  12 aggagcacagaggtatatttatcatccagtttttcagaataggtgatgttacccaacaccacaaacattatcatcatagctcatccaggggttgcaccag 111  Q
    |||||| ||| ||| ||| | ||||||| | ||| || ||||||||||||||||||||||||||||||||||||||| |||| | || |  |||||||||    
T  12289558 aggagctcaggggtgtatatgtcatccattatttgaggataggtgatgttacccaacaccacaaacattatcatcattgctccttcacgaattgcaccag 12289459  T
Q  112 ccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgct 175  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12289458 ccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgct 12289395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 12 - 181
Target Start/End: Original strand, 12483007 - 12483176
Alignment:
Q  12 aggagcacagaggtatatttatcatccagtttttcagaataggtgatgttacccaacaccacaaacattatcatcatagctcatccaggggttgcaccag 111  Q
    |||||| ||| ||||||| | ||||||||| |||||| ||| ||||||||||| |||| |||| |  | |||||||||||||   | |  ||||||||||    
T  12483007 aggagctcaggggtatatatgtcatccagtatttcaggataagtgatgttacctaacatcacagatgtcatcatcatagctccatctgaagttgcaccag 12483106  T
Q  112 ccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgctttgttg 181  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12483107 ccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgctttgttg 12483176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 44 - 176
Target Start/End: Complemental strand, 2105994 - 2105864
Alignment:
Q  44 ttcagaataggtgatgttacccaacaccacaaacattatcatcatagctcatccaggggttgcaccagccgggaatcgaacccgggtctgtaccgtggca 143  Q
    ||||| ||||||||||||||| |||| |||||| ||| |||||||||| | ||||  || ||||||||||||||||||||||||||||||||||||||||    
T  2105994 ttcaggataggtgatgttaccgaacatcacaaatattttcatcatagc-cctccacagg-tgcaccagccgggaatcgaacccgggtctgtaccgtggca 2105897  T
Q  144 gggtactattctaccactagaccactggtgctt 176  Q
    |||||||||||||||||||||||||||||||||    
T  2105896 gggtactattctaccactagaccactggtgctt 2105864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 89 - 180
Target Start/End: Original strand, 12670497 - 12670588
Alignment:
Q  89 agctcatccaggggttgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgctttgtt 180  Q
    ||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12670497 agctcattcagtggttgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgctttgtt 12670588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 333 - 566
Target Start/End: Complemental strand, 10764362 - 10764128
Alignment:
Q  333 agcctcagtatgagtcattttcaaagtagaag-attatacttagcaataccttccataacctaaggtgcatccaaagcattaaaagtatcattcacaatg 431  Q
    ||||||| |||||||||||||||||  ||||| |||||  |||||||||||||| | || || |||  |||||||| |||||||||||||||||||||||    
T  10764362 agcctcaatatgagtcattttcaaaacagaaggattattgttagcaataccttcaacaatctcaggcacatccaaatcattaaaagtatcattcacaatg 10764263  T
Q  432 ttatgttcatgtcttgtccacttgtaaaattgcatatgttaatctaacacaatt-nnnnnnnnnntcacaaccttgtcaacaagttcctttaaaagtctt 530  Q
      || || || |||||||||| | | |||| |||||||||||||||||||||||           |||||| ||   ||||||||||||||||| |||||    
T  10764262 ccattttgatatcttgtccacatat-aaatagcatatgttaatctaacacaattgaaattgtttttcacaagctcaccaacaagttcctttaaaggtctt 10764164  T
Q  531 ctatcaagaccttcaggaatcattggttgaaggtga 566  Q
    ||||||||||||||||| ||||||||||||||||||    
T  10764163 ctatcaagaccttcagggatcattggttgaaggtga 10764128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 104 - 182
Target Start/End: Original strand, 939435 - 939513
Alignment:
Q  104 tgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgctttgttgt 182  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  939435 tgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgctttattgt 939513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 19 - 141
Target Start/End: Original strand, 11949096 - 11949223
Alignment:
Q  19 cagaggtatatttatcatccagtttttcagaataggtgatgttacccaacaccacaaacattat-----catcatagctcatccaggggttgcaccagcc 113  Q
    ||||| ||||||  ||||||||| | |||| |||||||||||||||||||||||||| ||||||     ||||||||| | | ||    |||||||||||    
T  11949096 cagagatatattggtcatccagtatctcaggataggtgatgttacccaacaccacaatcattatcatcacatcatagcaccttcaaatattgcaccagcc 11949195  T
Q  114 gggaatcgaacccgggtctgtaccgtgg 141  Q
    |||||| ||||||||||||| |||||||    
T  11949196 gggaattgaacccgggtctgaaccgtgg 11949223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 58
Target Start/End: Original strand, 12479347 - 12479386
Alignment:
Q  19 cagaggtatatttatcatccagtttttcagaataggtgat 58  Q
    |||||||||||||||||||||||||||||  |||||||||    
T  12479347 cagaggtatatttatcatccagtttttcaagataggtgat 12479386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 12 - 47
Target Start/End: Original strand, 12670444 - 12670479
Alignment:
Q  12 aggagcacagaggtatatttatcatccagtttttca 47  Q
    |||||| |||||||||||||||||||||||||||||    
T  12670444 aggagctcagaggtatatttatcatccagtttttca 12670479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 86; Significance: 8e-41; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 333 - 481
Target Start/End: Complemental strand, 5586563 - 5586415
Alignment:
Q  333 agcctcagtatgagtcattttcaaagtagaag-attatacttagcaataccttccataacctaaggtgcatccaaagcattaaaagtatcattcacaatg 431  Q
    ||||||| |||||||| |||||||| |||||| |||||||||||||||||||||||||||||||||||||||| || ||||| |||||||||||||| ||    
T  5586563 agcctcaatatgagtcgttttcaaaatagaaggattatacttagcaataccttccataacctaaggtgcatcctaatcattataagtatcattcacactg 5586464  T
Q  432 ttatgttcatgtcttgtccacttgtaaaattgcatatgttaatctaacac 481  Q
    | |||||| |||||||| ||| ||| ||||||||||||||| ||||||||    
T  5586463 tcatgttcttgtcttgttcacatgt-aaattgcatatgttagtctaacac 5586415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 333 - 481
Target Start/End: Complemental strand, 5591524 - 5591376
Alignment:
Q  333 agcctcagtatgagtcattttcaaagtagaag-attatacttagcaataccttccataacctaaggtgcatccaaagcattaaaagtatcattcacaatg 431  Q
    ||||||| |||||||| |||||||| |||||| |||||||||||||||||||||||||||||||||||||||| || ||||| |||||||||||||| ||    
T  5591524 agcctcaatatgagtcgttttcaaaatagaaggattatacttagcaataccttccataacctaaggtgcatcctaatcattataagtatcattcacactg 5591425  T
Q  432 ttatgttcatgtcttgtccacttgtaaaattgcatatgttaatctaacac 481  Q
    | |||||| |||||||| ||| ||| ||||||||||||||| ||||||||    
T  5591424 tcatgttcttgtcttgttcacatgt-aaattgcatatgttagtctaacac 5591376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 103 - 177
Target Start/End: Complemental strand, 25796245 - 25796171
Alignment:
Q  103 ttgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgcttt 177  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25796245 ttgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgcttt 25796171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 114 - 167
Target Start/End: Original strand, 45343081 - 45343134
Alignment:
Q  114 gggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagacca 167  Q
    ||||||||||||| |||| ||||||||| ||||||||||  |||||||| ||||    
T  45343081 gggaatcgaaccctggtcagtaccgtgggagggtactatgataccactacacca 45343134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 86; Significance: 8e-41; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 33 - 182
Target Start/End: Complemental strand, 3701812 - 3701664
Alignment:
Q  33 tcatccagtttttcagaataggtgatgttacccaacaccacaaacattatcatcatagctcatccaggggttgcaccagccgggaatcgaacccgggtct 132  Q
    ||||||| | |||||| | | ||||||||||| ||||||||| | ||||||||||||||||   ||    ||||||||||||||||||||||||||||||    
T  3701812 tcatccaatgtttcaggagaagtgatgttaccgaacaccacagatattatcatcatagctccctcaaat-ttgcaccagccgggaatcgaacccgggtct 3701714  T
Q  133 gtaccgtggcagggtactattctaccactagaccactggtgctttgttgt 182  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3701713 gtaccgtggcagggtactattctaccactagaccactggtgctttgttgt 3701664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 33 - 182
Target Start/End: Complemental strand, 3713112 - 3712964
Alignment:
Q  33 tcatccagtttttcagaataggtgatgttacccaacaccacaaacattatcatcatagctcatccaggggt-tgcaccagccgggaatcgaacccgggtc 131  Q
    ||||||| | |||||| | | ||||||||||| ||||||||| | ||||||||||||||||  ||  |  | ||||||||||||||||||||||||||||    
T  3713112 tcatccaatgtttcaggagaagtgatgttaccgaacaccacagatattatcatcatagctc--cctcgaatatgcaccagccgggaatcgaacccgggtc 3713015  T
Q  132 tgtaccgtggcagggtactattctaccactagaccactggtgctttgttgt 182  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3713014 tgtaccgtggcagggtactattctaccactagaccactggtgctttgttgt 3712964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 14 - 180
Target Start/End: Complemental strand, 3705581 - 3705416
Alignment:
Q  14 gagcacagaggtatatttatcatccagtttttcagaataggtgatgttacccaacaccacaaacattatcatcatagctcatccaggggttgcaccagcc 113  Q
    |||| |||||||||  || ||||||| | |||||| | | ||||||||||| |||| |||| | ||||||||||||||||   ||    |||||||||||    
T  3705581 gagctcagaggtattattttcatccaatgtttcaggagaagtgatgttaccgaacaacacatatattatcatcatagctccctcaaaa-ttgcaccagcc 3705483  T
Q  114 gggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgctttgtt 180  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3705482 gggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgctttgtt 3705416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 103 - 182
Target Start/End: Complemental strand, 3708002 - 3707923
Alignment:
Q  103 ttgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgctttgttgt 182  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3708002 ttgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgctttgttgt 3707923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 103 - 182
Target Start/End: Complemental strand, 3719562 - 3719483
Alignment:
Q  103 ttgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgctttgttgt 182  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3719562 ttgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgctttgttgt 3719483  T

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Target: chr3; HSP #6
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 103 - 177
Target Start/End: Complemental strand, 32775343 - 32775269
Alignment:
Q  103 ttgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgcttt 177  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32775343 ttgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgcttt 32775269  T

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Target: chr3; HSP #7
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 103 - 177
Target Start/End: Complemental strand, 32815029 - 32814955
Alignment:
Q  103 ttgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgcttt 177  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32815029 ttgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgcttt 32814955  T

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Target: chr3; HSP #8
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 103 - 176
Target Start/End: Original strand, 26807449 - 26807522
Alignment:
Q  103 ttgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgctt 176  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26807449 ttgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgctt 26807522  T

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Target: chr3; HSP #9
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 103 - 178
Target Start/End: Complemental strand, 32772764 - 32772689
Alignment:
Q  103 ttgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgctttg 178  Q
    ||||| ||||| |||||| |||||  ||||||||||||||||||||||||||||||| || |||||| ||||||||    
T  32772764 ttgcagcagccaggaatcaaacccaagtctgtaccgtggcagggtactattctaccattaaaccacttgtgctttg 32772689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 114 - 167
Target Start/End: Original strand, 41845773 - 41845826
Alignment:
Q  114 gggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagacca 167  Q
    ||||||||||||| |||| ||||||||| ||||||||||  |||||||| ||||    
T  41845773 gggaatcgaaccctggtcagtaccgtgggagggtactatgataccactacacca 41845826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 85; Significance: 3e-40; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 19 - 176
Target Start/End: Complemental strand, 38327928 - 38327773
Alignment:
Q  19 cagaggtatatttat-catccagtttttcagaataggtgatgttacccaacaccacaaacattatcatcatagctcatccaggggttgcaccagccggga 117  Q
    ||||||||||||| | |||||||| ||||||   ||||||||||||||||||||||||| ||| |||||| |||||    | |   ||||||||||||||    
T  38327928 cagaggtatattttttcatccagtgtttcagggaaggtgatgttacccaacaccacaaatattttcatcacagctct---aagaaatgcaccagccggga 38327832  T
Q  118 atcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgctt 176  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38327831 atcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgctt 38327773  T

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Target: chr5; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 102 - 178
Target Start/End: Original strand, 31965397 - 31965473
Alignment:
Q  102 gttgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgctttg 178  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31965397 gttgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgctttg 31965473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 104 - 177
Target Start/End: Complemental strand, 8219806 - 8219733
Alignment:
Q  104 tgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgcttt 177  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8219806 tgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgcttt 8219733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 104 - 176
Target Start/End: Complemental strand, 38322673 - 38322601
Alignment:
Q  104 tgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgctt 176  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38322673 tgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgctt 38322601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 333 - 566
Target Start/End: Complemental strand, 38324874 - 38324640
Alignment:
Q  333 agcctcagtatgagtcattttcaaagtagaag-attatacttagcaataccttccataacctaaggtgcatccaaagcattaaaagtatcattcacaatg 431  Q
    ||||||| | ||||||||||||||| | |||| ||||||||||||||||||  ||| ||| |  ||||||||||||  ||||||||| | ||||||||||    
T  38324874 agcctcaatgtgagtcattttcaaaattgaaggattatacttagcaataccagccacaacttctggtgcatccaaataattaaaagtgttattcacaatg 38324775  T
Q  432 ttatgttcatgtcttgtccacttgtaaaattgcatatgttaatctaacacaatt-nnnnnnnnnntcacaaccttgtcaacaagttcctttaaaagtctt 530  Q
      |||| |||||||||||||| | | ||| ||||||||||| ||||||||||||           |||||| ||   ||||||||||||||||  || ||    
T  38324774 ccatgtgcatgtcttgtccacatat-aaactgcatatgttagtctaacacaattgaacctgtttttcacaagctcaccaacaagttcctttaagggtatt 38324676  T
Q  531 ctatcaagaccttcaggaatcattggttgaaggtga 566  Q
    ||||| ||||| ||||| ||||||||||||||||||    
T  38324675 ctatctagaccctcagggatcattggttgaaggtga 38324640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 78; Significance: 5e-36; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 104 - 181
Target Start/End: Complemental strand, 27981121 - 27981044
Alignment:
Q  104 tgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgctttgttg 181  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27981121 tgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgctttgttg 27981044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 103 - 176
Target Start/End: Original strand, 43849047 - 43849120
Alignment:
Q  103 ttgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgctt 176  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43849047 ttgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgctt 43849120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 103 - 175
Target Start/End: Original strand, 30953117 - 30953189
Alignment:
Q  103 ttgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgct 175  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30953117 ttgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgct 30953189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 114 - 167
Target Start/End: Complemental strand, 39755190 - 39755137
Alignment:
Q  114 gggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagacca 167  Q
    ||||||||||||| |||| ||||||||| ||||||||||  |||||||| ||||    
T  39755190 gggaatcgaaccctggtcagtaccgtgggagggtactatgataccactacacca 39755137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 114 - 167
Target Start/End: Complemental strand, 39760544 - 39760491
Alignment:
Q  114 gggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagacca 167  Q
    ||||||||||||| |||| ||||||||| ||||||||||  |||||||| ||||    
T  39760544 gggaatcgaaccctggtcagtaccgtgggagggtactatgataccactacacca 39760491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 75; Significance: 3e-34; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 104 - 178
Target Start/End: Original strand, 26741372 - 26741446
Alignment:
Q  104 tgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgctttg 178  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26741372 tgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgctttg 26741446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 103 - 176
Target Start/End: Complemental strand, 19186064 - 19185991
Alignment:
Q  103 ttgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgctt 176  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19186064 ttgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgctt 19185991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 104 - 175
Target Start/End: Complemental strand, 30161906 - 30161835
Alignment:
Q  104 tgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgct 175  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30161906 tgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgct 30161835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 104 - 175
Target Start/End: Original strand, 51386264 - 51386335
Alignment:
Q  104 tgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgct 175  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51386264 tgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgct 51386335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 73; Significance: 5e-33; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 104 - 176
Target Start/End: Complemental strand, 21882979 - 21882907
Alignment:
Q  104 tgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgctt 176  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21882979 tgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgctt 21882907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 73; Significance: 5e-33; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 104 - 176
Target Start/End: Original strand, 4767493 - 4767565
Alignment:
Q  104 tgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgctt 176  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4767493 tgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgctt 4767565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 104 - 176
Target Start/End: Complemental strand, 38551400 - 38551328
Alignment:
Q  104 tgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgctt 176  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38551400 tgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgctt 38551328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 114 - 167
Target Start/End: Complemental strand, 14428625 - 14428572
Alignment:
Q  114 gggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagacca 167  Q
    ||||||||||||| |||| ||||||||| ||||||||||  |||||||| ||||    
T  14428625 gggaatcgaaccctggtcagtaccgtgggagggtactatgataccactacacca 14428572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 114 - 167
Target Start/End: Complemental strand, 34962145 - 34962092
Alignment:
Q  114 gggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagacca 167  Q
    ||||||||||||| |||| ||||||||| ||||||||||  |||||||| ||||    
T  34962145 gggaatcgaaccctggtcagtaccgtgggagggtactatgataccactacacca 34962092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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