View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11142_low_30 (Length: 386)
Name: NF11142_low_30
Description: NF11142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11142_low_30 |
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Alignment Details
Target: chr8 (Bit Score: 330; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 14 - 368
Target Start/End: Original strand, 43802338 - 43802692
Alignment:
| Q |
14 |
aaattagtagaagaaaatgatttgtcaaagttaagttacttggatattgtgatcatggagaccttaagattataccctccgggaccacttgtgccacgcg |
113 |
Q |
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| T |
43802338 |
aaattagtagaagaaaatgatttgtcaaagttaagttacttggatattgtgatcatggagaccttaagattataccctccgggaccacttgtgccacgcg |
43802437 |
T |
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| Q |
114 |
agtcaacacaagattctacagtgcatggttatttcataaagnnnnnnncaagaataattttgaatttatgggcaataggaagagattctgcgatctggtc |
213 |
Q |
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| T |
43802438 |
agtcaacacaagattctacagtgcatggttatttcataaagaaaaaaacaagaataattttgaatttatgggcaataggaagagattctgcgatctggtc |
43802537 |
T |
|
| Q |
214 |
taataatgctgaagaattttttccagagagattcgtggataaaagtttagactaccgcggacatgatttccaatttataccatttggttttggtcgaaga |
313 |
Q |
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| T |
43802538 |
taataatgctgaagaattttttccggagagattcgtggataaaagtttagactaccgcggacatgatttccaatttataccatttggttttggtcgaaga |
43802637 |
T |
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| Q |
314 |
ggatgtcctggaataaacttgggactaactacagttaaacttgttgttgctcaat |
368 |
Q |
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| T |
43802638 |
ggatgtcctggaataaacttgggactaactacagttaaacttgttgttgctcaat |
43802692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 14 - 368
Target Start/End: Original strand, 43812907 - 43813261
Alignment:
| Q |
14 |
aaattagtagaagaaaatgatttgtcaaagttaagttacttggatattgtgatcatggagaccttaagattataccctccgggaccacttgtgccacgcg |
113 |
Q |
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|||||||| || || |||||| || |||||||||||||||| |||||||||||||||||||||||||||||||| ||| | |||||||||||||| |||| |
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| T |
43812907 |
aaattagtggaggagaatgatatggcaaagttaagttacttagatattgtgatcatggagaccttaagattatatcctgcaggaccacttgtgccgcgcg |
43813006 |
T |
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| Q |
114 |
agtcaacacaagattctacagtgcatggttatttcataaagnnnnnnncaagaataattttgaatttatgggcaataggaagagattctgcgatctggtc |
213 |
Q |
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|||||||| | ||| ||||||| |||||||||||||||||| ||||| ||||| ||||||| ||||||||||||||||||||| ||| ||||| |
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| T |
43813007 |
agtcaacagaggatgctacagttcatggttatttcataaagaaaaaaacaagagtaattgtgaatttgtgggcaataggaagagattctaagatatggtc |
43813106 |
T |
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| Q |
214 |
taataatgctgaagaattttttccagagagattcgtggataaaagtttagactaccgcggacatgatttccaatttataccatttggttttggtcgaaga |
313 |
Q |
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||||||||| |||||||||| |||||||||||| |||||||||| || |||||||| |||||||||||||||||||||||||||||||| ||||||||| |
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| T |
43813107 |
taataatgccgaagaattttatccagagagatttgtggataaaaacttcgactaccgtggacatgatttccaatttataccatttggtttcggtcgaaga |
43813206 |
T |
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| Q |
314 |
ggatgtcctggaataaacttgggactaactacagttaaacttgttgttgctcaat |
368 |
Q |
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| T |
43813207 |
ggatgtcctggaataaacttgggactagctacagttaaacttgttgttgctcaat |
43813261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 272 - 327
Target Start/End: Original strand, 31890728 - 31890783
Alignment:
| Q |
272 |
ggacatgatttccaatttataccatttggttttggtcgaagaggatgtcctggaat |
327 |
Q |
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||||||||||| ||| | |||||||||||||||||||||||| | ||||||||||| |
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| T |
31890728 |
ggacatgattttcaactcataccatttggttttggtcgaagaagttgtcctggaat |
31890783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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