View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11142_low_31 (Length: 380)
Name: NF11142_low_31
Description: NF11142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11142_low_31 |
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| [»] chr4 (7 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 349; Significance: 0; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 16 - 380
Target Start/End: Complemental strand, 27419897 - 27419533
Alignment:
| Q |
16 |
caaatatcatgatcttgtgttcaatatcgattttcttttttcctcctcacagtctttgtttttgagctatcaatcaggtcctacacaaccttataagttt |
115 |
Q |
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| T |
27419897 |
caaatatcatgatcttgtgttcaatatcgattttcttttttcctcctcacagtctttgtttttaagctatcaatcaggtcctacacaaccttataagttt |
27419798 |
T |
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| Q |
116 |
cacataaatatgatatatattcagttggtagatgtatattagctgcaaggtcaattagaagaaacatgtgagatgtctaaagcatgtctacaattggatt |
215 |
Q |
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| T |
27419797 |
cacataaatatgatatatattcagttggtagatgtatatttgctgcaatgtcaattagaagaaacatgtgagatgtctaaagcatgtctacaattggatt |
27419698 |
T |
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| Q |
216 |
atctatacccaaatgcaagaaaaaacatcaggtttctttcaccattgcattgtctcaaacttcaagtagggttatttgttggccattatctcacaatgtg |
315 |
Q |
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| T |
27419697 |
atctatacccaaatgcaagaaaaaacatcaggtttctttcaccattgcattgtctcaaacttcaagtagggttatttgttggccattatctcacaatgtg |
27419598 |
T |
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| Q |
316 |
gggtatgtgcatgttcttccattaagcttcctaatccttgaaaaaatatgtataggacaatacca |
380 |
Q |
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| T |
27419597 |
gggtatgtgcatgctcttccattaagcttcctaatccttgaaaaaatatgtataggacaatacca |
27419533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 181 - 359
Target Start/End: Complemental strand, 27412061 - 27411879
Alignment:
| Q |
181 |
atgtgagatgtctaaagcatgtctacaattggattatctataccca-----aatgcaagaaaaaacatcaggtttctttcaccattgcattgtctcaaac |
275 |
Q |
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| T |
27412061 |
atgtgagatgtctaaagcatgtctaccattggattagctatacccacccaaaatgcaagaaaaaacatcaggttccattcaccattgcattgtctcaaat |
27411962 |
T |
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| Q |
276 |
ttcaagtagggttatttgttggccattatctcacaatgtggggtatgtgcatgttcttccattaagcttcctaatccttgaaaa |
359 |
Q |
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| T |
27411961 |
tttaagt-gggttatatgttggacattatttttcaaagtagggtatgtgcattttcttccatttatcttcctaatccttgaaaa |
27411879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 82 - 259
Target Start/End: Complemental strand, 27425246 - 27425070
Alignment:
| Q |
82 |
ctatcaatcaggtcctacacaacctt-ataagtttcacataaatatgatatatattcagttggtagatgtatattagctgcaaggtcaattagaagaaac |
180 |
Q |
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| T |
27425246 |
ctataaatcaggtcctacgcaagctttacaagtggcacataaatatgatttattt--agctggtatatgtatattagtttccttgtcaattagaagaaag |
27425149 |
T |
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| Q |
181 |
atgtgagatgtctaaagcatgtctacaattggattatctatacccaaatgcaagaaaaaacatcaggtttctttcacca |
259 |
Q |
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| T |
27425148 |
atgtgagatgtctaaaccatgtctaccattgcattagctataccaaaattcaataacaaacatcaggtttctttcacca |
27425070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 81 - 233
Target Start/End: Original strand, 27570777 - 27570933
Alignment:
| Q |
81 |
gctatcaatcaggtcctacacaacctt-ataagtttcacataaatatgatatatattcagttggtagatgtatattagctgcaaggtcaattagaagaa- |
178 |
Q |
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| T |
27570777 |
gctaacaattaggtcctacacaagctttacaagttgcacataaatctgatatatattcaaatggtagatgtatattagctgcattgtcaattcgaagaaa |
27570876 |
T |
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| Q |
179 |
--acatgtgagatgtctaaagcatgtctacaattggattatctatacccaaatgcaa |
233 |
Q |
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| T |
27570877 |
ttacatgtgagatgtcgagagcatgtctaccattggattagttataacaaaatgcaa |
27570933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 110 - 222
Target Start/End: Complemental strand, 27422628 - 27422516
Alignment:
| Q |
110 |
aagtttcacataaatatgatatatattcagttggtagatgtatattagctgcaaggtcaattagaagaaacatgtgagatgtctaaagcatgtctacaat |
209 |
Q |
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| T |
27422628 |
aagttgcacacaaatctgagatgtatttagctggtagatgtatattagctataacatcaattagaagaaacatatgagatgtctaatggatgtcaaccat |
27422529 |
T |
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| Q |
210 |
tggattatctata |
222 |
Q |
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| T |
27422528 |
tggattagctata |
27422516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 153 - 222
Target Start/End: Original strand, 27566722 - 27566791
Alignment:
| Q |
153 |
attagctgcaaggtcaattagaagaaacatgtgagatgtctaaagcatgtctacaattggattatctata |
222 |
Q |
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| T |
27566722 |
attagttgcaatgtcaattacaagaaacatacgagatgtctaaagcatgtctaccattggattagctata |
27566791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 306 - 338
Target Start/End: Original strand, 27566858 - 27566890
Alignment:
| Q |
306 |
tcacaatgtggggtatgtgcatgttcttccatt |
338 |
Q |
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| T |
27566858 |
tcacaaagtggggtatgtgcatgttcttccatt |
27566890 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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