View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11142_low_32 (Length: 380)

Name: NF11142_low_32
Description: NF11142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11142_low_32
NF11142_low_32
[»] chr4 (16 HSPs)
chr4 (17-380)||(27569713-27570076)
chr4 (71-377)||(27412780-27413090)
chr4 (70-380)||(27423335-27423641)
chr4 (271-379)||(27415735-27415844)
chr4 (114-380)||(27425925-27426188)
chr4 (271-380)||(27420521-27420630)
chr4 (115-377)||(27565714-27565975)
chr4 (302-380)||(27475528-27475606)
chr4 (144-241)||(27490220-27490319)
chr4 (329-380)||(27468303-27468354)
chr4 (297-380)||(27478827-27478910)
chr4 (302-377)||(27504038-27504113)
chr4 (123-221)||(27497081-27497179)
chr4 (328-377)||(27524640-27524689)
chr4 (316-377)||(27563309-27563370)
chr4 (328-380)||(27506811-27506863)
[»] chr5 (2 HSPs)
chr5 (302-380)||(1756706-1756784)
chr5 (143-248)||(1754929-1755036)


Alignment Details
Target: chr4 (Bit Score: 290; Significance: 1e-163; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 17 - 380
Target Start/End: Original strand, 27569713 - 27570076
Alignment:
Q  17 atcatgtgttactcctacttcgaaatttctcaggataccaagtcccnnnnnnncttatagcaagcaatgttacttatataatcatatgtagtatgttatt 116  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||| |||||||| ||    
T  27569713 atcatgtgttactgctacttcgaaatttctcaggataccaagtccctttttttcttatagcaagcaatgttacttatataatcatatgcagtatgttctt 27569812  T
Q  117 aagtgcaataaaccaaaaacagaaaggagatatttgagtagttgaattcattgtcattaaacaaaaaatatttgctctataaatttctcaatctaatggt 216  Q
    ||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||    
T  27569813 aagtgcaataaaccaaaaacagagaggagatatttgagtagtcgaattcattgtcattaaacaaaatatatttgttctataaatttctcaatctaatggt 27569912  T
Q  217 cattttttctcatctttacaatttgttaagatgcgagtttacnnnnnnntatcactactaaactatgtcagtctcttctggtgttagattcatatcccgt 316  Q
    ||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27569913 cattttttctcatctttacaatttgttaagatgcgagtttacaaaaaaatatcactactaaactatgtcagtctcttctggtgttagattcatatcccgt 27570012  T
Q  317 tcatgcgagatgttatatgttgaaagatatcttcggtgcaaggaatggtgatgccacccatggg 380  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  27570013 tcatgcgagatgttatatgttgaaagatatcttcggtgcaaggaatggtgaggccacccatggg 27570076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 71 - 377
Target Start/End: Complemental strand, 27413090 - 27412780
Alignment:
Q  71 ttatagcaagcaatgttacttatataatcatatgtagtatgttattaagtgcaataaaccaaaaacagaaaggagatatttgagtagttgaattcattgt 170  Q
    |||||||||||||| ||||| ||||| || ||| |  || |||  |||||||||||||||||||||| | | ||| || |||| |||| |||||| || |    
T  27413090 ttatagcaagcaatattactcatatagtcctatttcttaagtttctaagtgcaataaaccaaaaacatagaagagttacttgaatagtcgaattcgtttt 27412991  T
Q  171 catta-aacaaaaaatatttgc--tctataaatttctcaatctaatggtcattttttctcatctttacaatttgttaagatgcg-agtttacnnnnnnnt 266  Q
    ||||| ||||||||||||||    || |||||||| |||||||||| |||| |||||| ||||||||||||||  | ||||||  |||||||       |    
T  27412990 cattataacaaaaaatatttatattccataaatttgtcaatctaatagtcactttttcccatctttacaatttcattagatgcctagtttacaaaaaaat 27412891  T
Q  267 atcactactaaactatgtcagtctcttctggtgttagattcatatcccgttcatgcgagatgttatatgttgaaagatatcttcggtgcaaggaatggtg 366  Q
     || |||||||||||||||||| |||| |||||| ||||||||| ||| |||  ||||||||||||||||||||||| |||||| |||||||||||||||    
T  27412890 gtctctactaaactatgtcagtttcttttggtgtcagattcatagcccattcgagcgagatgttatatgttgaaagacatcttccgtgcaaggaatggtg 27412791  T
Q  367 atgccacccat 377  Q
    | |||||||||    
T  27412790 aggccacccat 27412780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 70 - 380
Target Start/End: Complemental strand, 27423641 - 27423335
Alignment:
Q  70 cttatagcaagcaatgttacttatataatcatatgtagtatgttattaagtgcaataaaccaaaaacagaaaggagatatttgagtagttgaattcattg 169  Q
    ||||||||||||||  ||||| ||||| |||||| |  || ||| ||||||||||||||||||||||| ||||||||| |||||||||| ||||||||||    
T  27423641 cttatagcaagcaacattactcatatagtcatatttcataagtttttaagtgcaataaaccaaaaacacaaaggagatgtttgagtagtcgaattcattg 27423542  T
Q  170 tcattaaacaaaaaatatttgctctataaatttctcaatctaatggtcattttttctcatctttacaatttgttaagat-gcgagtttacnnnnnnntat 268  Q
    |||||||  ||||  | |||   |||||||||| |||||||||| | ||||||   ||||||||||||| || ||||||  | || ||||       |||    
T  27423541 tcattaa--aaaatgtctttatgctataaatttgtcaatctaat-gacatttt---tcatctttacaatctgataagataactagattacaaaaaattat 27423448  T
Q  269 cactact-aaactatgtcagtctcttctggtgttagattcatatcccgttcatgcgagatgttatatgttgaaagatatcttcggtgcaaggaatggtga 367  Q
    | ||||| |||||| || ||||| || ||||||| ||||||||  || |||| | |||| ||||||||||| || | |||||| |||||||||| |||||    
T  27423447 ctctactaaaactacgttagtctattttggtgtttgattcatagtccattcaagtgagaagttatatgttggaaaacatcttccgtgcaaggaacggtga 27423348  T
Q  368 tgccacccatggg 380  Q
     ||||||||||||    
T  27423347 ggccacccatggg 27423335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 271 - 379
Target Start/End: Complemental strand, 27415844 - 27415735
Alignment:
Q  271 ctactaaactatgtcagtctcttctg-gtgttagattcatatcccgttcatgcgagatgttatatgttgaaagatatcttcggtgcaaggaatggtgatg 369  Q
    ||||||||||||||||||||||| |  ||||||||||||||| ||||||| |||||||||||| |||||||||| |||||| |||||||||||||||| |    
T  27415844 ctactaaactatgtcagtctcttttttgtgttagattcatattccgttcaagcgagatgttatgtgttgaaagacatcttctgtgcaaggaatggtgagg 27415745  T
Q  370 ccacccatgg 379  Q
    ||||||||||    
T  27415744 ccacccatgg 27415735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 114 - 380
Target Start/End: Complemental strand, 27426188 - 27425925
Alignment:
Q  114 attaagtgcaataaaccaaaaacagaaaggagatatttgagtagttgaattcattgtcattaaacaaaaaatatttgctctataaatttctcaatctaat 213  Q
    ||||||||| |||||||||||||  ||| ||| |  ||||||||||||||||||| ||||||||||||| |||||| |      |||||   ||||||||    
T  27426188 attaagtgcgataaaccaaaaacgtaaaagagctgcttgagtagttgaattcattctcattaaacaaaacatatttac------aatttgctaatctaat 27426095  T
Q  214 ggtcattt-tttctcatc-tttacaatttgttaagat-gcgagtttacnnnnnnntatcactactaaactatgtcagtctcttctggtgttagattcata 310  Q
    ||||||||  |||||||| |||| |||||| | ||||  | ||  |||       |||  |||||||||||||||||||| || |||||| |||||||||    
T  27426094 ggtcatttccttctcatcttttagaatttgatgagataactagaatacaaaaaaatatttctactaaactatgtcagtctgttttggtgtcagattcata 27425995  T
Q  311 tcccgttcatgcgagatgttatatgttgaaagatatcttcggtgcaaggaatggtgatgccacccatggg 380  Q
      || |||| ||||||||| ||||||||||| | ||| ||||||||||||||||||| ||||||||||||    
T  27425994 ggccattcaagcgagatgtcatatgttgaaatacatcctcggtgcaaggaatggtgaggccacccatggg 27425925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 271 - 380
Target Start/End: Complemental strand, 27420630 - 27420521
Alignment:
Q  271 ctactaaactatgtcagtctcttctggtgttagattcatatcccgttcatgcgagatgttatatgttgaaagatatcttcggtgcaaggaatggtgatgc 370  Q
    ||||||||||||||||| ||||| |||| | ||||||||| ||| || | || ||| |||||||||||||||| |||||| |||||||||||||||| ||    
T  27420630 ctactaaactatgtcagactcttttggtctcagattcatagcccattgaagcaagaagttatatgttgaaagacatcttccgtgcaaggaatggtgaggc 27420531  T
Q  371 cacccatggg 380  Q
    ||||||||||    
T  27420530 cacccatggg 27420521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 115 - 377
Target Start/End: Original strand, 27565714 - 27565975
Alignment:
Q  115 ttaagtgcaataaaccaaaaacagaaaggagatatttgagtagttgaattcattgtcattaaacaaaaaatatttgctctataaatttctcaatctaatg 214  Q
    ||||||||||||||||||||||| | | ||| |  |||| |||| |||||||||||| ||||||||||     ||| | || || ||| |||||||||||    
T  27565714 ttaagtgcaataaaccaaaaacatagaagagctgcttgaatagtcgaattcattgtcgttaaacaaaa-----ttgatatacaa-tttatcaatctaatg 27565807  T
Q  215 gtcattttttctcatctttacaatttgttaagatgcg-agtttacnnnnnnnta----tcactactaaactatgtcagtctcttctggtgttagattcat 309  Q
    ||||||||||  ||||||||||||||| ||||||||  |||||||       ||    || ||||||||||||||||||||  | ||||||||| |||||    
T  27565808 gtcatttttttgcatctttacaatttgataagatgcctagtttacaaaaaaataaatatccctactaaactatgtcagtctaatttggtgttaggttcat 27565907  T
Q  310 atcccgttcatgcgagatgttatatgttgaaagatatcttcggtgcaaggaatggtgatgccacccat 377  Q
    |  || |||| || ||| ||||||||||| |||| |||||||   ||||||||||||| |||||||||    
T  27565908 agtccattcaagcaagaagttatatgttggaagacatcttcgccacaaggaatggtgaggccacccat 27565975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 302 - 380
Target Start/End: Original strand, 27475528 - 27475606
Alignment:
Q  302 agattcatatcccgttcatgcgagatgttatatgttgaaagatatcttcggtgcaaggaatggtgatgccacccatggg 380  Q
    ||||||||| ||| |||| || ||| ||||||||||| |||| |||||||| |||||||||||||| ||||||||||||    
T  27475528 agattcatagcccattcaagcaagaagttatatgttggaagacatcttcggagcaaggaatggtgaggccacccatggg 27475606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 144 - 241
Target Start/End: Complemental strand, 27490319 - 27490220
Alignment:
Q  144 agatatttgagtagttgaattcattgtcattaaacaaaaaatatttgctctataaatttctcaatctaatggtcatt--ttttctcatctttacaatttg 241  Q
    |||| ||| |||||||||||||||||||||||||||| || ||| | ||||| |||||| | ||||||||| |||||  ||||||  |||||||||||||    
T  27490319 agatgttttagtagttgaattcattgtcattaaacaataagtatatactctacaaatttttgaatctaatgttcatttcttttctagtctttacaatttg 27490220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 329 - 380
Target Start/End: Original strand, 27468303 - 27468354
Alignment:
Q  329 ttatatgttgaaagatatcttcggtgcaaggaatggtgatgccacccatggg 380  Q
    |||||||||| |||| |||||| |||||||||||||||| ||||||||||||    
T  27468303 ttatatgttggaagacatcttccgtgcaaggaatggtgaggccacccatggg 27468354  T

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Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 297 - 380
Target Start/End: Original strand, 27478827 - 27478910
Alignment:
Q  297 gtgttagattcatatcccgttcatgcgagatgttatatgttgaaagatatcttcggtgcaaggaatggtgatgccacccatggg 380  Q
    |||| ||| ||||| ||| |||| || ||| ||||||||||| || | |||||||| |||||||||||||| ||||||||||||    
T  27478827 gtgtaagaatcatagcccattcaagcaagaagttatatgttggaacacatcttcggagcaaggaatggtgaggccacccatggg 27478910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 302 - 377
Target Start/End: Complemental strand, 27504113 - 27504038
Alignment:
Q  302 agattcatatcccgttcatgcgagatgttatatgttgaaagatatcttcggtgcaaggaatggtgatgccacccat 377  Q
    |||||||||  || |||| || ||| ||||| ||||| |||| ||||||||||||||||||||||| |||||||||    
T  27504113 agattcatagtccattcaagcaagaagttatgtgttggaagacatcttcggtgcaaggaatggtgaggccacccat 27504038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 123 - 221
Target Start/End: Original strand, 27497081 - 27497179
Alignment:
Q  123 aataaaccaaaaacagaaaggagatatttgagtagttgaattcattgtcattaaacaaaaaatatttgctctataaatttctcaatctaatggtcattt 221  Q
    ||||||||||||||| | || |||| |||||||||  ||||| ||| |||||||||||||||||  | ||  ||||| || ||||||||||||| ||||    
T  27497081 aataaaccaaaaacacagagtagatgtttgagtagccgaattaattttcattaaacaaaaaatacatactgcataaacttgtcaatctaatggtaattt 27497179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 328 - 377
Target Start/End: Complemental strand, 27524689 - 27524640
Alignment:
Q  328 gttatatgttgaaagatatcttcggtgcaaggaatggtgatgccacccat 377  Q
    ||||||||||| |||| |||||||||||| |||||||||| |||||||||    
T  27524689 gttatatgttggaagacatcttcggtgcacggaatggtgaggccacccat 27524640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 316 - 377
Target Start/End: Original strand, 27563309 - 27563370
Alignment:
Q  316 ttcatgcgagatgttatatgttgaaagatatcttcggtgcaaggaatggtgatgccacccat 377  Q
    |||| |||||| |||||||||||||||  |||||| ||||||||||| |||| |||||||||    
T  27563309 ttcaagcgagaagttatatgttgaaaggcatcttcagtgcaaggaattgtgaggccacccat 27563370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 328 - 380
Target Start/End: Complemental strand, 27506863 - 27506811
Alignment:
Q  328 gttatatgttgaaagatatcttcggtgcaaggaatggtgatgccacccatggg 380  Q
    ||||| |||||||||| |||||| ||||||||||||||||  |||||||||||    
T  27506863 gttatgtgttgaaagacatcttcagtgcaaggaatggtgagtccacccatggg 27506811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 302 - 380
Target Start/End: Original strand, 1756706 - 1756784
Alignment:
Q  302 agattcatatcccgttcatgcgagatgttatatgttgaaagatatcttcggtgcaaggaatggtgatgccacccatggg 380  Q
    ||||||||| ||| |||| || ||| || |||||||| |||  ||||||||||||||||||||||| ||||||||||||    
T  1756706 agattcatagcccattcaagcaagaggtaatatgttggaaggcatcttcggtgcaaggaatggtgaggccacccatggg 1756784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 143 - 248
Target Start/End: Complemental strand, 1755036 - 1754929
Alignment:
Q  143 gagatatttgagtagttgaattcattgtcattaaacaaaaaa-tatttgctctataaatttctcaatctaatggtcattt-tttctcatctttacaattt 240  Q
    |||||||||||| |||  ||||||||||||| |||||||||| |   | |||||||||||| |||||||||   |||||| |||| ||||||||||||||    
T  1755036 gagatatttgagaagtcaaattcattgtcatgaaacaaaaaaatgcatactctataaatttgtcaatctaaacctcatttctttcccatctttacaattt 1754937  T
Q  241 gttaagat 248  Q
    | ||||||    
T  1754936 gataagat 1754929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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