View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11142_low_39 (Length: 327)
Name: NF11142_low_39
Description: NF11142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11142_low_39 |
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| [»] chr4 (1 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 1 - 327
Target Start/End: Complemental strand, 37379745 - 37379419
Alignment:
| Q |
1 |
aaggttggatcctctgctcttaccgtagggaaacagttcctacaccctgcttatacacttggaaagaatctaaaaggaaaagatcttctcgctttagcta |
100 |
Q |
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| T |
37379745 |
aaggttggatcctctgctcttaccgtagggaaacagttcctacaccctgcttatacacttggaaagaatctaaaaggaaaagatcttctcgctttagcta |
37379646 |
T |
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| Q |
101 |
cgaaatttaatgaactctcttctataactgttgtgctaacggcgaaagatgttaacgttgaaggattctgtatgagtcgttgtgggacccatggttctgt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37379645 |
cgaaatttaatgaactctcttctataactgttgtgctaacggcgaaagatgttaacgttgaaggattctgtatgagtcgttgtgggacccatggttctgt |
37379546 |
T |
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| Q |
201 |
ccgacgtggcagtggtggagcgagaactccttatatttgggttggaaacgctgagacgctatgtcccggacaatgcgcgtggccttttcatcaacctatt |
300 |
Q |
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| T |
37379545 |
ccgacgtggcagtggtggagcgagaactccttatatttgggttggaaacgctgagacgctctgtcccggacaatgcgcgtggccttttcatcaacctatt |
37379446 |
T |
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| Q |
301 |
tacggaccacagacaccgccgttagtt |
327 |
Q |
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| T |
37379445 |
tacggaccacagacaccgccgttagtt |
37379419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 228 - 327
Target Start/End: Original strand, 1760827 - 1760926
Alignment:
| Q |
228 |
tccttatatttgggttggaaacgctgagacgctatgtcccggacaatgcgcgtggccttttcatcaacctatttacggaccacagacaccgccgttagtt |
327 |
Q |
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| T |
1760827 |
tccttacatttgggttggaaactctgagacccaatgtcctggtcaatgcgcatggccatttcaccaaccaatttacgggccccaaacaccaccgttagtt |
1760926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 311
Target Start/End: Original strand, 26996368 - 26996444
Alignment:
| Q |
235 |
atttgggttggaaacgctgagacgctatgtcccggacaatgcgcgtggccttttcatcaacctatttacggaccaca |
311 |
Q |
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| T |
26996368 |
atttgggttggaaattcagagacacaatgtgctggtcaatgcgcgtggccatttcatcaaccaatttatggtccaca |
26996444 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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