View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11142_low_41 (Length: 325)

Name: NF11142_low_41
Description: NF11142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11142_low_41
NF11142_low_41
[»] chr5 (9 HSPs)
chr5 (17-325)||(35364499-35364805)
chr5 (17-143)||(35752636-35752762)
chr5 (17-143)||(35404400-35404526)
chr5 (17-112)||(35374256-35374351)
chr5 (31-142)||(35421488-35421599)
chr5 (31-142)||(35434833-35434944)
chr5 (31-112)||(35384038-35384116)
chr5 (89-142)||(35417009-35417062)
chr5 (80-116)||(35364218-35364254)
[»] chr1 (4 HSPs)
chr1 (17-241)||(10421852-10422070)
chr1 (21-156)||(10417939-10418074)
chr1 (29-157)||(10412224-10412352)
chr1 (80-116)||(10422405-10422441)
[»] chr7 (1 HSPs)
chr7 (17-152)||(29625358-29625493)
[»] chr2 (4 HSPs)
chr2 (17-143)||(30633112-30633238)
chr2 (17-143)||(30660841-30660967)
chr2 (17-143)||(30669521-30669647)
chr2 (17-96)||(30631054-30631133)
[»] chr8 (1 HSPs)
chr8 (17-117)||(13563209-13563309)
[»] chr3 (1 HSPs)
chr3 (25-117)||(1153059-1153151)


Alignment Details
Target: chr5 (Bit Score: 290; Significance: 1e-163; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 17 - 325
Target Start/End: Complemental strand, 35364805 - 35364499
Alignment:
Q  17 catgtaatcccttgccattcacagaaatgtagagactcattccatgatggcagagaatcagacacaccatttgtaagcttttctttcaaagcaagcaaag 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35364805 catgtaatcccttgccattcacagaaatgtagagactcattccatgatggcagagaatcagacacaccatttgtaagcttttctttcaaagcaagcaaag 35364706  T
Q  117 caaatttatcagtctgtgaactcaaagcaaaagcaacagtaattgctgatgacaggaaataatgcaacaaaatttggctagcaaagcaaagaaaaaatat 216  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35364705 caagtttatcagtctgtgaactcaaagcaaaagcaacagtaattgctgatgacaggaaataatgcaacaaaatttggctagcaaagcaaagaaaaaatat 35364606  T
Q  217 cgacataaaagtcctcatttttctattgaagaatatgtattttgatatagatcaaagatatatggttggttatttaaagagaagtagtcatgtgcaatag 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35364605 cgacataaaagtcctcatttttctattgaagaatatgtattttg--atagatcaaagatatatggttggttatttaaagagaagtagtcatgtgcaatag 35364508  T
Q  317 ataggtgct 325  Q
    |||| ||||    
T  35364507 atagatgct 35364499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 17 - 143
Target Start/End: Complemental strand, 35752762 - 35752636
Alignment:
Q  17 catgtaatcccttgccattcacagaaatgtagagactcattccatgatggcagagaatcagacacaccatttgtaagcttttctttcaaagcaagcaaag 116  Q
    |||||||||||||||||  ||||||||||||||||||||||||||||||||| |||||| |  |||||||||||||||||||| || |||||||||||||    
T  35752762 catgtaatcccttgccacacacagaaatgtagagactcattccatgatggcaaagaatctggtacaccatttgtaagcttttcctttaaagcaagcaaag 35752663  T
Q  117 caaatttatcagtctgtgaactcaaag 143  Q
    |||  ||||||||||| ||||||||||    
T  35752662 caagcttatcagtctgcgaactcaaag 35752636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 17 - 143
Target Start/End: Complemental strand, 35404526 - 35404400
Alignment:
Q  17 catgtaatcccttgccattcacagaaatgtagagactcattccatgatggcagagaatcagacacaccatttgtaagcttttctttcaaagcaagcaaag 116  Q
    ||||||||||||||||||||||| ||||||||||||| |||||||||||||| |||||| |  |||||||||||||||||||| ||||| ||||||||||    
T  35404526 catgtaatcccttgccattcacaaaaatgtagagacttattccatgatggcaaagaatctggtacaccatttgtaagcttttccttcaatgcaagcaaag 35404427  T
Q  117 caaatttatcagtctgtgaactcaaag 143  Q
    | |  |||||||||| |||||||||||    
T  35404426 ccagcttatcagtctttgaactcaaag 35404400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 17 - 112
Target Start/End: Complemental strand, 35374351 - 35374256
Alignment:
Q  17 catgtaatcccttgccattcacagaaatgtagagactcattccatgatggcagagaatcagacacaccatttgtaagcttttctttcaaagcaagc 112  Q
    |||||||  |||||||||||||||||||||| |||||||||||||||||| ||||| || |  ||||||||||| |||||||| ||||||||||||    
T  35374351 catgtaactccttgccattcacagaaatgtaaagactcattccatgatggaagagagtctggtacaccatttgtgagcttttccttcaaagcaagc 35374256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 31 - 142
Target Start/End: Complemental strand, 35421599 - 35421488
Alignment:
Q  31 ccattcacagaaatgtagagactcattccatgatggcagagaatcagacacaccatttgtaagcttttctttcaaagcaagcaaagcaaatttatcagtc 130  Q
    ||||||||||||||| ||||| |||||||||||||| |||| |||||  | |||||| ||||| ||||||||||||| ||||||||||  ||||||||||    
T  35421599 ccattcacagaaatgaagagattcattccatgatggaagagcatcaggtataccattggtaagtttttctttcaaagaaagcaaagcatgtttatcagtc 35421500  T
Q  131 tgtgaactcaaa 142  Q
      ||||||||||    
T  35421499 actgaactcaaa 35421488  T

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Target: chr5; HSP #6
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 31 - 142
Target Start/End: Complemental strand, 35434944 - 35434833
Alignment:
Q  31 ccattcacagaaatgtagagactcattccatgatggcagagaatcagacacaccatttgtaagcttttctttcaaagcaagcaaagcaaatttatcagtc 130  Q
    ||||||||||||||  ||||| |||||||||||||| |||| |||||  | |||||| ||||| ||||||||||||| ||||||||||  ||||||||||    
T  35434944 ccattcacagaaataaagagattcattccatgatggaagagcatcaggtataccattggtaagtttttctttcaaagaaagcaaagcatgtttatcagtc 35434845  T
Q  131 tgtgaactcaaa 142  Q
      ||||||||||    
T  35434844 actgaactcaaa 35434833  T

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Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 31 - 112
Target Start/End: Complemental strand, 35384116 - 35384038
Alignment:
Q  31 ccattcacagaaatgtagagactcattccatgatggcagagaatcagacacaccatttgtaagcttttctttcaaagcaagc 112  Q
    |||||||||||||| ||   |||||||||||||||| |||||||| |  || |||||||| |||||||| ||||||||||||    
T  35384116 ccattcacagaaatata---actcattccatgatggaagagaatctggtacgccatttgtgagcttttccttcaaagcaagc 35384038  T

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Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 142
Target Start/End: Complemental strand, 35417062 - 35417009
Alignment:
Q  89 gtaagcttttctttcaaagcaagcaaagcaaatttatcagtctgtgaactcaaa 142  Q
    |||||||||||||| |||| ||||||||||  ||||||||||  ||||||||||    
T  35417062 gtaagcttttcttttaaagaaagcaaagcatgtttatcagtcactgaactcaaa 35417009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 80 - 116
Target Start/End: Complemental strand, 35364254 - 35364218
Alignment:
Q  80 acaccatttgtaagcttttctttcaaagcaagcaaag 116  Q
    ||||||||| |||||||||| ||||||||||||||||    
T  35364254 acaccatttttaagcttttccttcaaagcaagcaaag 35364218  T

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Target: chr1 (Bit Score: 122; Significance: 1e-62; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 17 - 241
Target Start/End: Original strand, 10421852 - 10422070
Alignment:
Q  17 catgtaatcccttgccattcacagaaatgtagagactcattccatgatggcagagaatcagacacaccatttgtaagcttttctttcaaagcaagcaaag 116  Q
    ||||||||||| ||||| |||||||||| ||||||||||||||||||||||| |||||| |  ||||||||||||||| |||||||||||||||||        
T  10421852 catgtaatcccctgccactcacagaaatatagagactcattccatgatggcaaagaatctggtacaccatttgtaagcgtttctttcaaagcaagc---- 10421947  T
Q  117 caaatttatcagtctgtgaactcaaagcaaaagcaacagtaattgctgat---gacaggaaataatgcaacaaaatttggctagcaaagcaaagaaaaaa 213  Q
         ||||||||| ||||||||||||| | |||||||||| ||||||||   ||||||||||||| || ||||||||||||||||||||||||||||||    
T  10421948 -----ttatcagtccgtgaactcaaagctagagcaacagtagttgctgatgatgacaggaaataatacaccaaaatttggctagcaaagcaaagaaaaaa 10422042  T
Q  214 tatcgacataaaagtcctcatttttcta 241  Q
    |||||||||| |||||||||||||||||    
T  10422043 tatcgacatataagtcctcatttttcta 10422070  T

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Target: chr1; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 21 - 156
Target Start/End: Original strand, 10417939 - 10418074
Alignment:
Q  21 taatcccttgccattcacagaaatgtagagactcattccatgatggcagagaatcagacacaccatttgtaagcttttctttcaaagcaagcaaagcaaa 120  Q
    ||||||||||||| |||||||||||||||||||||||| ||||||||| |||||| |  |||||||||||||||||||| ||||||||||||||||||      
T  10417939 taatcccttgccaatcacagaaatgtagagactcattctatgatggcaaagaatctggtacaccatttgtaagcttttccttcaaagcaagcaaagcatg 10418038  T
Q  121 tttatcagtctgtgaactcaaagcaaaagcaacagt 156  Q
     |||||||||| || ||||||||||  |||||||||    
T  10418039 cttatcagtctctgtactcaaagcatgagcaacagt 10418074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 29 - 157
Target Start/End: Original strand, 10412224 - 10412352
Alignment:
Q  29 tgccattcacagaaatgtagagactcattccatgatggcagagaatcagacacaccatttgtaagcttttctttcaaagcaagcaaagcaaatttatcag 128  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||    |||||||||||||||||||| ||||||||||||||||||   | ||||     
T  10412224 tgccattcacagaaatgtagagactcattccatgatggcaaagaatcttgtacaccatttgtaagcttttccttcaaagcaagcaaagcatgctcatcaa 10412323  T
Q  129 tctgtgaactcaaagcaaaagcaacagta 157  Q
    ||  |||||||||||||| || |||||||    
T  10412324 tcgctgaactcaaagcaagagtaacagta 10412352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 80 - 116
Target Start/End: Original strand, 10422405 - 10422441
Alignment:
Q  80 acaccatttgtaagcttttctttcaaagcaagcaaag 116  Q
    ||||||||| |||||||||| ||||||||||||||||    
T  10422405 acaccatttttaagcttttccttcaaagcaagcaaag 10422441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 84; Significance: 7e-40; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 17 - 152
Target Start/End: Original strand, 29625358 - 29625493
Alignment:
Q  17 catgtaatcccttgccattcacagaaatgtagagactcattccatgatggcagagaatcagacacaccatttgtaagcttttctttcaaagcaagcaaag 116  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| ||||| ||||||||||| ||||||||||||||||    
T  29625358 catgtaatcccttgccattcacagaaatgtaaagactcattccatgatggcagagaatccgacaccccattcgtaagcttttccttcaaagcaagcaaag 29625457  T
Q  117 caaatttatcagtctgtgaactcaaagcaaaagcaa 152  Q
    | |  |||||||| | ||||||| ||| || |||||    
T  29625458 cgagcttatcagtgtctgaactcgaagaaatagcaa 29625493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 83; Significance: 3e-39; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 17 - 143
Target Start/End: Complemental strand, 30633238 - 30633112
Alignment:
Q  17 catgtaatcccttgccattcacagaaatgtagagactcattccatgatggcagagaatcagacacaccatttgtaagcttttctttcaaagcaagcaaag 116  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||| | |||| || |||||||||||||||||||| ||||||||||||||||    
T  30633238 catgtaatcccttcccattcacagaaatgtagagactcattccatgatggcaaataatctgatacaccatttgtaagcttttccttcaaagcaagcaaag 30633139  T
Q  117 caaatttatcagtctgtgaactcaaag 143  Q
    | |  |||||||||| |||| ||||||    
T  30633138 ctagcttatcagtctttgaattcaaag 30633112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 17 - 143
Target Start/End: Complemental strand, 30660967 - 30660841
Alignment:
Q  17 catgtaatcccttgccattcacagaaatgtagagactcattccatgatggcagagaatcagacacaccatttgtaagcttttctttcaaagcaagcaaag 116  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||| | |||| || |||||||||||||||||||| ||||||||||||||||    
T  30660967 catgtaatcccttcccattcacagaaatgtagagactcattccatgatggcaaataatctgatacaccatttgtaagcttttccttcaaagcaagcaaag 30660868  T
Q  117 caaatttatcagtctgtgaactcaaag 143  Q
    | |  |||||||||| |||| ||||||    
T  30660867 ctagcttatcagtctttgaattcaaag 30660841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 17 - 143
Target Start/End: Complemental strand, 30669647 - 30669521
Alignment:
Q  17 catgtaatcccttgccattcacagaaatgtagagactcattccatgatggcagagaatcagacacaccatttgtaagcttttctttcaaagcaagcaaag 116  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||| | |||  |  |||||||||||||||||||| ||||||||||||||||    
T  30669647 catgtaatcccttcccattcacagaaatgtagagactcattccatgatggcaaataatatggtacaccatttgtaagcttttccttcaaagcaagcaaag 30669548  T
Q  117 caaatttatcagtctgtgaactcaaag 143  Q
    | |  |||||||||| |||| ||||||    
T  30669547 ccagcttatcagtctttgaattcaaag 30669521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 17 - 96
Target Start/End: Complemental strand, 30631133 - 30631054
Alignment:
Q  17 catgtaatcccttgccattcacagaaatgtagagactcattccatgatggcagagaatcagacacaccatttgtaagctt 96  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||| | |||| |  |||||||||||||||||    
T  30631133 catgtaatcccttcccattcacagaaatgtagagactcattccatgatggcaaataatctggtacaccatttgtaagctt 30631054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 69; Significance: 6e-31; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 17 - 117
Target Start/End: Complemental strand, 13563309 - 13563209
Alignment:
Q  17 catgtaatcccttgccattcacagaaatgtagagactcattccatgatggcagagaatcagacacaccatttgtaagcttttctttcaaagcaagcaaag 116  Q
    ||||||| ||| |||||||||||||||||||||||||||||||||||||| |||||||| | ||| ||||||||||||||||| | ||||||||||||||    
T  13563309 catgtaaccccctgccattcacagaaatgtagagactcattccatgatggtagagaatcgggcacgccatttgtaagcttttcctacaaagcaagcaaag 13563210  T
Q  117 c 117  Q
    |    
T  13563209 c 13563209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 25 - 117
Target Start/End: Complemental strand, 1153151 - 1153059
Alignment:
Q  25 cccttgccattcacagaaatgtagagactcattccatgatggcagagaatcagacacaccatttgtaagcttttctttcaaagcaagcaaagc 117  Q
    ||||||||||| ||| ||||||||||||||||||||||| ||||||||||||| ||| ||||||||||| ||||  |||||||||||||||||    
T  1153151 cccttgccatttacaaaaatgtagagactcattccatgacggcagagaatcaggcacgccatttgtaagttttttcttcaaagcaagcaaagc 1153059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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