View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11142_low_43 (Length: 312)

Name: NF11142_low_43
Description: NF11142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11142_low_43
NF11142_low_43
[»] scaffold0734 (1 HSPs)
scaffold0734 (17-300)||(593-876)


Alignment Details
Target: scaffold0734 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: scaffold0734
Description:

Target: scaffold0734; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 17 - 300
Target Start/End: Complemental strand, 876 - 593
Alignment:
Q  17 atcagcttatatattttctcagattttgctgcaagatcaggtaacaaacttgcttgtttgtgtacatgtaaacttcgcaaagttgatgagtttcctgtag 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  876 atcagcttatatattttctcagattttgctgcaagatcaggtaacaaacttgcttgtttgtgtacatgtaaactttgcaaagttgatgagtttcctgtag 777  T
Q  117 aggaagactctggtccatcttcaataaacacagcacctttgttagcatcctttgtccaacgctttaaaatatacatgtctggaatttctgcaacattttt 216  Q
    ||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  776 aggaagactttggtccatcttcaataaacacaacacctttgttagcatcctttgtccaacgctttaaaatatacatgtctggaatttctgcaacattttt 677  T
Q  217 tgcatgaaaaatcaccaagatatgcctacatagcaatcccataaattgaaaaagctggcagtcacaagtagcaacctttgtctc 300  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||    
T  676 tgcatgaaaaatcaccaagatatgcctacatagcaatcccatcaattgaaaaagctgacagtcacaagtagcaacctttgtctc 593  T

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