View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11142_low_44 (Length: 312)

Name: NF11142_low_44
Description: NF11142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11142_low_44
NF11142_low_44
[»] chr4 (1 HSPs)
chr4 (9-298)||(48904993-48905282)
[»] chr8 (10 HSPs)
chr8 (16-158)||(2051804-2051946)
chr8 (11-85)||(1948215-1948289)
chr8 (11-122)||(2034625-2034736)
chr8 (11-124)||(2029705-2029818)
chr8 (11-123)||(2058900-2059012)
chr8 (11-130)||(2055689-2055808)
chr8 (11-85)||(2047983-2048057)
chr8 (11-85)||(10769391-10769465)
chr8 (18-85)||(2023298-2023365)
chr8 (22-85)||(2038740-2038803)
[»] chr2 (3 HSPs)
chr2 (11-86)||(28735021-28735096)
chr2 (33-93)||(28742176-28742236)
chr2 (11-86)||(28699521-28699596)


Alignment Details
Target: chr4 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 9 - 298
Target Start/End: Original strand, 48904993 - 48905282
Alignment:
Q  9 agcagagattcttggaccaacttgatttgcaactactctgtgttcaacactcttaaacttgtcatttgttataagctgcaattcatacgtacaaataatt 108  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  48904993 agcagatattcttggaccaacttgatttgcaactactctgtgttcaacactcttaaacttgtcatttgttataagctgcgattcatacgtacaaataatt 48905092  T
Q  109 acctatatgcttacatatattattgacccttcaaatcaatatcttaaaaataaattgaatcaatgagacctctagattatgacaaagttcaactagttcg 208  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48905093 accgatatgcttacatatattattgacccttcaaatcaatatcttaaaaataaattgaatcaatgagacctctagattatgacaaagttcaactagttcg 48905192  T
Q  209 ttagattagggctttttagttggttagtgtgttctattttactttgtgcagagcacattatgattgcttaataagtgccgggttgatttt 298  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  48905193 ttagattagggctttttagttggttagtgtgttctattttactttgtgcagagcacattatgattgcttaataagtgccaggttgatttt 48905282  T

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Target: chr8 (Bit Score: 67; Significance: 9e-30; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 16 - 158
Target Start/End: Complemental strand, 2051946 - 2051804
Alignment:
Q  16 attcttggaccaacttgatttgcaactactctgtgttcaacactcttaaacttgtcatttgttataagctgcaattcatacgtacaaataattacctata 115  Q
    ||||||||||||||||||||||||| |||||| ||| |||||||||| || ||||||||||| ||||||| ||||||| ||  |||||||||||  | ||    
T  2051946 attcttggaccaacttgatttgcaagtactctatgtacaacactcttgaatttgtcatttgtaataagctacaattcaaacaaacaaataattagttgta 2051847  T
Q  116 tgcttacatatattattgacccttcaaatcaatatcttaaaaa 158  Q
    || |||||| |||||| || ||||| ||| |||||||||||||    
T  2051846 tgtttacatctattatcgatccttccaattaatatcttaaaaa 2051804  T

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Target: chr8; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 11 - 85
Target Start/End: Original strand, 1948215 - 1948289
Alignment:
Q  11 cagagattcttggaccaacttgatttgcaactactctgtgttcaacactcttaaacttgtcatttgttataagct 85  Q
    |||| |||||||||||||||||||||||||||||||| |||||||||||||| || |||||||||||||||||||    
T  1948215 cagatattcttggaccaacttgatttgcaactactctatgttcaacactcttgaatttgtcatttgttataagct 1948289  T

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Target: chr8; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 11 - 122
Target Start/End: Complemental strand, 2034736 - 2034625
Alignment:
Q  11 cagagattcttggaccaacttgatttgcaactactctgtgttcaacactcttaaacttgtcatttgttataagctgcaattcatacgtacaaataattac 110  Q
    |||| |||||||| ||||||| |||||||||||||||||||||||||||||| ||  |||||||||||||||||| ||||| |  |  |||||||||||     
T  2034736 cagatattcttgggccaacttcatttgcaactactctgtgttcaacactcttgaatctgtcatttgttataagctacaattgaagcaaacaaataattag 2034637  T
Q  111 ctatatgcttac 122  Q
     |||||||||||    
T  2034636 ttatatgcttac 2034625  T

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Target: chr8; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 11 - 124
Target Start/End: Complemental strand, 2029818 - 2029705
Alignment:
Q  11 cagagattcttggaccaacttgatttgcaactactctgtgttcaacactcttaaacttgtcatttgttataagctgcaattcatacgtacaaataattac 110  Q
    |||| |||||||||||||||||||||||||||||||| |||||||||||||| ||  | |||||||||||||||| |||   | ||  |||||||||||     
T  2029818 cagatattcttggaccaacttgatttgcaactactctatgttcaacactcttgaatctatcatttgttataagctacaaggtaaacaaacaaataattag 2029719  T
Q  111 ctatatgcttacat 124  Q
     |||||||||||||    
T  2029718 ttatatgcttacat 2029705  T

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Target: chr8; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 11 - 123
Target Start/End: Complemental strand, 2059012 - 2058900
Alignment:
Q  11 cagagattcttggaccaacttgatttgcaactactctgtgttcaacactcttaaacttgtcatttgttataagctgcaattcatacgtacaaataattac 110  Q
    |||| |||||||||||||||||||| |||| |||||| ||| |||||||||| || ||||||||||||||||||| ||||||| ||   ||||||||||     
T  2059012 cagatattcttggaccaacttgattggcaattactctatgtacaacactcttgaatttgtcatttgttataagctacaattcaaacaatcaaataattag 2058913  T
Q  111 ctatatgcttaca 123  Q
     |||||| |||||    
T  2058912 atatatgtttaca 2058900  T

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Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 11 - 130
Target Start/End: Complemental strand, 2055808 - 2055689
Alignment:
Q  11 cagagattcttggaccaacttgatttgcaactactctgtgttcaacactcttaaacttgtcatttgttataagctgcaattcatacgtacaaataattac 110  Q
    |||| |||||||||||||||  ||| |||| |||||| ||| |||||||||| || ||||||||||||||||||| || |||| ||  ||||| |||||     
T  2055808 cagatattcttggaccaactgtattggcaagtactctatgtacaacactcttgaatttgtcatttgttataagctacagttcaaacaaacaaagaattag 2055709  T
Q  111 ctatatgcttacatatatta 130  Q
     ||| || |||||| |||||    
T  2055708 ttatgtgtttacatctatta 2055689  T

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Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 11 - 85
Target Start/End: Complemental strand, 2048057 - 2047983
Alignment:
Q  11 cagagattcttggaccaacttgatttgcaactactctgtgttcaacactcttaaacttgtcatttgttataagct 85  Q
    |||| ||||||||||||| || |||||||| |||| ||||||||| |||||| ||  ||||||||||||||||||    
T  2048057 cagatattcttggaccaattttatttgcaagtactttgtgttcaaaactcttgaatctgtcatttgttataagct 2047983  T

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Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 11 - 85
Target Start/End: Complemental strand, 10769465 - 10769391
Alignment:
Q  11 cagagattcttggaccaacttgatttgcaactactctgtgttcaacactcttaaacttgtcatttgttataagct 85  Q
    |||| |||||||||||||| | ||||||||  |||||||| || |||||||| || |||||||||||||||||||    
T  10769465 cagatattcttggaccaacattatttgcaagaactctgtgctccacactcttgaatttgtcatttgttataagct 10769391  T

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Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 85
Target Start/End: Complemental strand, 2023365 - 2023298
Alignment:
Q  18 tcttggaccaacttgatttgcaactactctgtgttcaacactcttaaacttgtcatttgttataagct 85  Q
    ||||||||| || |||||||| || |||||||| ||||||||||| || ||||||||||| |||||||    
T  2023365 tcttggaccgacatgatttgctaccactctgtgctcaacactcttgaatttgtcatttgtaataagct 2023298  T

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Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 22 - 85
Target Start/End: Complemental strand, 2038803 - 2038740
Alignment:
Q  22 ggaccaacttgatttgcaactactctgtgttcaacactcttaaacttgtcatttgttataagct 85  Q
    ||||||| || ||| |||| ||||||||||||||||||||| ||  ||||||||||||||||||    
T  2038803 ggaccaattttattcgcaagtactctgtgttcaacactcttgaatctgtcatttgttataagct 2038740  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 11 - 86
Target Start/End: Original strand, 28735021 - 28735096
Alignment:
Q  11 cagagattcttggaccaacttgatttgcaactactctgtgttcaacactcttaaacttgtcatttgttataagctg 86  Q
    |||| |||||||||||||  | |||||| | |||||| |||||||||||||| || || |||||||||||||||||    
T  28735021 cagatattcttggaccaatgtcatttgccagtactctatgttcaacactcttgaatttatcatttgttataagctg 28735096  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 33 - 93
Target Start/End: Original strand, 28742176 - 28742236
Alignment:
Q  33 atttgcaactactctgtgttcaacactcttaaacttgtcatttgttataagctgcaattca 93  Q
    |||||| | ||||||||| ||||||||||| ||  ||||||||||||||||||||| ||||    
T  28742176 atttgctagtactctgtgctcaacactcttgaatctgtcatttgttataagctgcagttca 28742236  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 11 - 86
Target Start/End: Original strand, 28699521 - 28699596
Alignment:
Q  11 cagagattcttggaccaacttgatttgcaactactctgtgttcaacactcttaaacttgtcatttgttataagctg 86  Q
    |||| |||||||||||||    |||||| | |||||| |||||||||||||| || |||||||||||||| |||||    
T  28699521 cagatattcttggaccaatgccatttgccagtactctatgttcaacactcttgaatttgtcatttgttatcagctg 28699596  T

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