View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11142_low_47 (Length: 290)
Name: NF11142_low_47
Description: NF11142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11142_low_47 |
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Alignment Details
Target: chr8 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 18 - 284
Target Start/End: Complemental strand, 10416513 - 10416247
Alignment:
| Q |
18 |
gtttggaatgctcaaggatacatcctcagagtaagtgcattactctttaacttaaccagtttttatctatctatattcaaattttgaatgtcgatacttg |
117 |
Q |
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| T |
10416513 |
gtttggaatgctcaaggatacatcctcagagtaagtgcattactctttaacttaaccagtttttatctatctatattcaaattttgaatgtcgatacttg |
10416414 |
T |
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| Q |
118 |
caatacaatcatcataattgcaaccacattttctcggcgtctccaatctctacggtcaaaagttggtcgtcggctgcaaaggatggagacgctgaagagg |
217 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||| | |||||||||||||||||||||||||||||| |
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| T |
10416413 |
caatacaatcatcataattgcaaccacatcttctcggcgtctccaatctctatggtcaaaagttgggggccggctgcaaaggatggagacgctgaagagg |
10416314 |
T |
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| Q |
218 |
atgcgagctcaattaattttgaatttgaatcccattttgagtcttactactcagatattcatctcac |
284 |
Q |
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|||||||||||||||||| |||||||||||||||||| ||||||||||||||| |||||||| |||| |
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| T |
10416313 |
atgcgagctcaattaattctgaatttgaatcccatttcgagtcttactactcatatattcatgtcac |
10416247 |
T |
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