View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11142_low_48 (Length: 289)
Name: NF11142_low_48
Description: NF11142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11142_low_48 |
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Alignment Details
Target: chr6 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 1 - 281
Target Start/End: Original strand, 488852 - 489132
Alignment:
| Q |
1 |
tctggtgcactgacccatatggtgatccaaatggtacatattggctacaaggatgtcacatggtgcattgtgcatacaatagcttatggatgggaaattt |
100 |
Q |
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| T |
488852 |
tctggtgcactgacccatatggtgatccaaatggtacatattggctacaaggatgtcacatggtgcattgtgcatacaatagcttatggatgggaaattt |
488951 |
T |
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| Q |
101 |
catccaaccagattgggatatgtttcaatctacacacccttgtgctgcttttcatgcagcttctagagccatatctggtggtccaatttacataagtgac |
200 |
Q |
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| T |
488952 |
catccaaccagattgggatatgtttcaatctacacacccttgtgctgcttttcatgcagcttctagagccatatctggtggtccaatttacataagtgac |
489051 |
T |
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| Q |
201 |
accgttggaaatcacaattttgaccttctcaagaaactagctttgcctgatggtaccatccttagatgtgaaacctatgct |
281 |
Q |
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| T |
489052 |
actgttggaaatcacaattttgaccttctcaagaaactagctttgcctgatggtaccatccttagatgtgaaacctatgct |
489132 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 94; Significance: 6e-46; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 1 - 190
Target Start/End: Complemental strand, 34697228 - 34697039
Alignment:
| Q |
1 |
tctggtgcactgacccatatggtgatccaaatggtacatattggctacaaggatgtcacatggtgcattgtgcatacaatagcttatggatgggaaattt |
100 |
Q |
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| T |
34697228 |
tctggtgttctgatccatctggtgatccaaatggtacatattggctccaaggttgtcacatggtacattgtgcctataacagtttatggatgggaaattt |
34697129 |
T |
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| Q |
101 |
catccaaccagattgggatatgtttcaatctacacacccttgtgctgcttttcatgcagcttctagagccatatctggtggtccaattta |
190 |
Q |
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| T |
34697128 |
cattcacccagattgggacatgtttcaatccactcacccttgtgctgaatttcatgctgcctctagagctgtctctggtggaccaattta |
34697039 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 3 - 217
Target Start/End: Complemental strand, 43637980 - 43637766
Alignment:
| Q |
3 |
tggtgcactgacccatatggtgatccaaatggtacatattggctacaaggatgtcacatggtgcattgtgcatacaatagcttatggatgggaaatttca |
102 |
Q |
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|||||||| |||||| ||| ||||||||||||||||||||| | |||||||||||||||||||||||||| || || |||||||||||||||||||| | |
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| T |
43637980 |
tggtgcacggacccagctggggatccaaatggtacatattggttgcaaggatgtcacatggtgcattgtgcctataacagcttatggatgggaaatttta |
43637881 |
T |
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| Q |
103 |
tccaaccagattgggatatgtttcaatctacacacccttgtgctgcttttcatgcagcttctagagccatatctggtggtccaatttacataagtgacac |
202 |
Q |
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| T |
43637880 |
tacaaccagattgggacatgttccaatctcatcatgcttgttctgaatttcatgctgcttctcgagcaatctctggcggaccaatttatgtaagcgactc |
43637781 |
T |
|
| Q |
203 |
cgttggaaatcacaa |
217 |
Q |
| |
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|||||||| ||||| |
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| T |
43637780 |
tgttggaaaccacaa |
43637766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 130
Target Start/End: Original strand, 43975962 - 43976035
Alignment:
| Q |
57 |
cacatggtgcattgtgcatacaatagcttatggatgggaaatttcatccaaccagattgggatatgtttcaatc |
130 |
Q |
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|||||| | |||||| | ||||||||||||||||||||| | | || ||||| |||||||| ||||||||||| |
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| T |
43975962 |
cacatgattcattgttcctacaatagcttatggatgggacaaatgattcaacctgattgggacatgtttcaatc |
43976035 |
T |
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