View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11142_low_50 (Length: 277)
Name: NF11142_low_50
Description: NF11142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11142_low_50 |
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Alignment Details
Target: chr3 (Bit Score: 229; Significance: 1e-126; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 9 - 237
Target Start/End: Original strand, 31704573 - 31704801
Alignment:
| Q |
9 |
ccaagaagaaaacaagtgtaaagatggacaattggaatcccatttgggacgaagagtttgagttccgtttgacagttccggagctcgcgttgctccggat |
108 |
Q |
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| T |
31704573 |
ccaagaagaaaacaagtgtaaagatggacaattggaatcccatttgggacgaagagtttgagttccgtttgacagttccggagctcgcgttgctccggat |
31704672 |
T |
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| Q |
109 |
cgaagtaaaggataaagatcagacaaaagatgattttgctggacagacttgtttgccagtatcagagctaagacatggatttcggtctgttgctttgtgt |
208 |
Q |
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| T |
31704673 |
cgaagtaaaggataaagatcagacaaaagatgattttgctggacagacttgtttgccagtatcagagctaagacatggatttcggtctgttgctttgtgt |
31704772 |
T |
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| Q |
209 |
gacagaaagggaaagaaatataactctgt |
237 |
Q |
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| T |
31704773 |
gacagaaagggaaagaaatataactctgt |
31704801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 11 - 237
Target Start/End: Original strand, 31654207 - 31654433
Alignment:
| Q |
11 |
aagaagaaaacaagtgtaaagatggacaattggaatcccatttgggacgaagagtttgagttccgtttgacagttccggagctcgcgttgctccggatcg |
110 |
Q |
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| T |
31654207 |
aagatgaaaacaagtgtaaagatggacaattggtatcctgtttgggacgaagagttcgaattccaattgactgttccagagcttgcattgctccggatcg |
31654306 |
T |
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| Q |
111 |
aagtaaaggataaagatcagacaaaagatgattttgctggacagacttgtttgccagtatcagagctaagacatggatttcggtctgttgctttgtgtga |
210 |
Q |
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| T |
31654307 |
aagtgaaagataaagataagggatcagacgattttgctggacaaacttgtttgcctgtatcagagctaagacatggatttcggtctgttgctttgtgtga |
31654406 |
T |
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| Q |
211 |
cagaaagggaaagaaatataactctgt |
237 |
Q |
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| T |
31654407 |
cagaaagggaaagaaatataactctgt |
31654433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 11 - 127
Target Start/End: Original strand, 31717787 - 31717903
Alignment:
| Q |
11 |
aagaagaaaacaagtgtaaagatggacaattggaatcccatttgggacgaagagtttgagttccgtttgacagttccggagctcgcgttgctccggatcg |
110 |
Q |
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|||||||||||||| ||| ||| |||||| ||| |||| ||||||||||||| ||| | | |||||||| | |||||||||||| ||||||||||||| |
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| T |
31717787 |
aagaagaaaacaagagtagagacggacaactggtatcctatttgggacgaagtgttcaaatcccgtttgagtgatccggagctcgctttgctccggatcg |
31717886 |
T |
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| Q |
111 |
aagtaaaggataaagat |
127 |
Q |
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||| |||||||||||| |
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| T |
31717887 |
cagtgaaggataaagat |
31717903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 179 - 231
Target Start/End: Original strand, 31717917 - 31717969
Alignment:
| Q |
179 |
agacatggatttcggtctgttgctttgtgtgacagaaagggaaagaaatataa |
231 |
Q |
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| T |
31717917 |
agacaaggattttggtttgttgctttgtgcgacagaaagggaaagaaatataa |
31717969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 84; Significance: 6e-40; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 50 - 237
Target Start/End: Complemental strand, 44901421 - 44901234
Alignment:
| Q |
50 |
atttgggacgaagagtttgagttccgtttgacagttccggagctcgcgttgctccggatcgaagtaaaggataaagatcagacaaaagatgattttgctg |
149 |
Q |
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||||||||||||||||||| ||||| || || |||| ||||| || ||||||| ||||||| | |||||||||||| ||| | |||||||||| | | |
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| T |
44901421 |
atttgggacgaagagtttgtattccgattaaccattccagagcttgctttgctccagatcgaactgaaggataaagatatgacgacagatgatttttccg |
44901322 |
T |
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| Q |
150 |
gacagacttgtttgccagtatcagagctaagacatggatttcggtctgttgctttgtgtgacagaaagggaaagaaatataactctgt |
237 |
Q |
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| T |
44901321 |
gacagacctgtttgcctgtatcagagctaagacatggatttcggtttgttcgtttgtgtgactgaaaggggaagaaatttaactctgt |
44901234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 133 - 190
Target Start/End: Original strand, 35510755 - 35510812
Alignment:
| Q |
133 |
aaaagatgattttgctggacagacttgtttgccagtatcagagctaagacatggattt |
190 |
Q |
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| T |
35510755 |
aaaagatgactttgctggacaaacatgtttgccagtttcagagataaaacttggattt |
35510812 |
T |
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