View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11142_low_51 (Length: 270)

Name: NF11142_low_51
Description: NF11142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11142_low_51
NF11142_low_51
[»] chr3 (2 HSPs)
chr3 (21-258)||(32450690-32450928)
chr3 (96-258)||(32424719-32424881)


Alignment Details
Target: chr3 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 21 - 258
Target Start/End: Original strand, 32450690 - 32450928
Alignment:
Q  21 gttatatttattacctgtacacatatat--ttaaaatgtgttaaccatctactatattattttgatgtgaaatttataacataacttacatgaacaactg 118  Q
    ||||||||||||||||| ||||||||||  ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32450690 gttatatttattacctgaacacatatatatttaaaatgtgtta-ccatctactatattattttgatgtgaaatttataacataacttacatgaacaactg 32450788  T
Q  119 agtctcgagcagccagagcaagaatatcagcacaggacacaaccttggggcatgctttctccacactggctttgatgtcatcaatcacgttgaatcctct 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32450789 agtctcgagcagccagagcaagaatatcagcacaggacacaaccttggggcatgctttctccacactggctttgatgtcatcaatcacgttgaatcctct 32450888  T
Q  219 agctgaattattgttagccgctgctgttttctctcctatg 258  Q
    |||||||||||||||||| |||||||||||||||||||||    
T  32450889 agctgaattattgttagctgctgctgttttctctcctatg 32450928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 96 - 258
Target Start/End: Original strand, 32424719 - 32424881
Alignment:
Q  96 aacataacttacatgaacaactgagtctcgagcagccagagcaagaatatcagcacaggacacaaccttggggcatgctttctccacactggctttgatg 195  Q
    ||||||||| ||||||||||| ||||| || |||||||| | |||||||||||||||||||||||||   ||||||||||| |||||| |||||||||||    
T  32424719 aacataactcacatgaacaacagagtcccgggcagccagggtaagaatatcagcacaggacacaacccctgggcatgctttttccacattggctttgatg 32424818  T
Q  196 tcatcaatcacgttgaatcctctagctgaattattgttagccgctgctgttttctctcctatg 258  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||    
T  32424819 tcatcaatcacgttgaatcctctagctgaattattgttagcagctgctgttttttctcctatg 32424881  T

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