View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11142_low_53 (Length: 256)
Name: NF11142_low_53
Description: NF11142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11142_low_53 |
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Alignment Details
Target: chr5 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 14 - 240
Target Start/End: Complemental strand, 3731881 - 3731655
Alignment:
| Q |
14 |
acctgtgtatattgagagaattgggatgatagatattaacaaactgtggcaaataaccacacaagaaaggcttatcaagcatcatgtgtcagaacaagag |
113 |
Q |
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| T |
3731881 |
acctgtgtatattgagagaattgggatgatagatattaacaaactgtggcaaataaccacacaagaaaggcttatcaagcatcatgtgtcagaacaagag |
3731782 |
T |
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| Q |
114 |
aaaacactaagagtaagataccctgcatgttcattagcagctaaaagacacatagcttccaccacaagtatcttggatgtcaatggagtagtaagcaaat |
213 |
Q |
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| T |
3731781 |
aaaacactaagagttagataccctgcatgttcgttagcagctaaaagacacatagcttccaccacaagtatcttggatgtcaatggagtagtaagcaaat |
3731682 |
T |
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| Q |
214 |
ttttcagtgtttcataatttatcatat |
240 |
Q |
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||||||||||||||||||||||||||| |
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| T |
3731681 |
ttttcagtgtttcataatttatcatat |
3731655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 16 - 234
Target Start/End: Complemental strand, 11684197 - 11683975
Alignment:
| Q |
16 |
ctgtgtatattgagagaattgggatgatagatattaacaaactgtggcaaataaccacacaagaaaggcttatcaagcatcatgtgtcagaacaagagaa |
115 |
Q |
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| T |
11684197 |
ctgtgtatatcgagagaattgggatgatagatgttaacaaactgtggcaaataaccacacaagaaaggcttatcaagcatcatgtgtcagaacaagagaa |
11684098 |
T |
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| Q |
116 |
aacactaagagtaagataccctgcatgttcattagcagctaaaagacacatagcttccaccacaagtatcttggatgtcaatggagtagtaagcaaattt |
215 |
Q |
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| T |
11684097 |
aaccctaagagtaagataccctgcatgttcattagcagccaaaagacacatagcatccaccacaagtatcttggatggcaatggagtagtaagcaaattt |
11683998 |
T |
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| Q |
216 |
ttc----agtgtttcataattta |
234 |
Q |
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||| |||||||||||||||| |
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| T |
11683997 |
ttcatatagtgtttcataattta |
11683975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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