View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11142_low_55 (Length: 255)

Name: NF11142_low_55
Description: NF11142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11142_low_55
NF11142_low_55
[»] scaffold0286 (1 HSPs)
scaffold0286 (17-255)||(12529-12767)
[»] chr6 (11 HSPs)
chr6 (17-255)||(2170494-2170732)
chr6 (17-255)||(2187894-2188126)
chr6 (45-159)||(28142683-28142797)
chr6 (45-129)||(28239435-28239519)
chr6 (45-129)||(28246413-28246497)
chr6 (23-129)||(28525261-28525367)
chr6 (46-104)||(26805556-26805614)
chr6 (49-149)||(29829103-29829203)
chr6 (46-104)||(27715568-27715626)
chr6 (45-131)||(28152278-28152364)
chr6 (84-129)||(29671548-29671593)
[»] scaffold0038 (2 HSPs)
scaffold0038 (45-129)||(39597-39681)
scaffold0038 (45-129)||(46575-46659)
[»] scaffold0349 (1 HSPs)
scaffold0349 (46-104)||(16319-16377)
[»] scaffold0019 (1 HSPs)
scaffold0019 (45-130)||(55270-55355)
[»] chr4 (3 HSPs)
chr4 (44-100)||(18652591-18652647)
chr4 (44-100)||(18676673-18676729)
chr4 (44-100)||(18686716-18686772)


Alignment Details
Target: scaffold0286 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: scaffold0286
Description:

Target: scaffold0286; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 17 - 255
Target Start/End: Original strand, 12529 - 12767
Alignment:
Q  17 caccgagtttagtttggcaggaagtgctaggattccagagtggtttgatcaacaaagcaagggaccatcaatttctttctggtttcgtgacaggttccct 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12529 caccgagtttagtttggcaggaagtgctaggattccagagtggtttgatcaacaaagcaagggaccatcaatttctttctggtttcgtgacaggttccct 12628  T
Q  117 tccatagctctcttcgttgctagtaaatcaatggataacaagcatctcaacagtgattttccttcattaacagcctatctgagaaccaatatctataaat 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12629 tccatagctctcttcgttgctagtaaatcaatggataacaagcatctcaacagtgattttccttcattaacagcctatctgagaaccaatatctataaat 12728  T
Q  217 atgatattgagtttgacatcgacagtatcgatctcaatc 255  Q
    ||||||||||||||||||||||||||||| |||||||||    
T  12729 atgatattgagtttgacatcgacagtatcaatctcaatc 12767  T

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Target: chr6 (Bit Score: 235; Significance: 1e-130; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 17 - 255
Target Start/End: Complemental strand, 2170732 - 2170494
Alignment:
Q  17 caccgagtttagtttggcaggaagtgctaggattccagagtggtttgatcaacaaagcaagggaccatcaatttctttctggtttcgtgacaggttccct 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2170732 caccgagtttagtttggcaggaagtgctaggattccagagtggtttgatcaacaaagcaagggaccatcaatttctttctggtttcgtgacaggttccct 2170633  T
Q  117 tccatagctctcttcgttgctagtaaatcaatggataacaagcatctcaacagtgattttccttcattaacagcctatctgagaaccaatatctataaat 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2170632 tccatagctctcttcgttgctagtaaatcaatggataacaagcatctcaacagtgattttccttcattaacagcctatctgagaaccaatatctataaat 2170533  T
Q  217 atgatattgagtttgacatcgacagtatcgatctcaatc 255  Q
    ||||||||||||||||||||||||||||| |||||||||    
T  2170532 atgatattgagtttgacatcgacagtatcaatctcaatc 2170494  T

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Target: chr6; HSP #2
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 17 - 255
Target Start/End: Original strand, 2187894 - 2188126
Alignment:
Q  17 caccgagtttagtttggcaggaagtgctaggattccagagtggtttgatcaacaaagcaagggaccatcaatttctttctggtttcgtgacaggttccct 116  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| ||||||||||||||||||| |||||||||| ||||||||||    
T  2187894 caccgagtttagtttggcaggaagtgctagggttccagagtggtttgatcaccaaagcgagggaccatcaatttctttttggtttcgtggcaggttccct 2187993  T
Q  117 tccatagctctcttcgttgctagtaaatcaatggataacaagcatctcaacagtgattttccttcattaacagcctatctgagaaccaatatctataaat 216  Q
    ||||||||||||||||||||||||  ||||| |||||||| ||||| |||||||||||||| ||||||||||||| ||||||||||      |||||       
T  2187994 tccatagctctcttcgttgctagtctatcaacggataacaggcatcccaacagtgattttctttcattaacagcccatctgagaac------ctataccg 2188087  T
Q  217 atgatattgagtttgacatcgacagtatcgatctcaatc 255  Q
    ||| |||||||||||||||| ||||| ||||||||||||    
T  2188088 atggtattgagtttgacatcaacagtgtcgatctcaatc 2188126  T

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Target: chr6; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 45 - 159
Target Start/End: Original strand, 28142683 - 28142797
Alignment:
Q  45 aggattccagagtggtttgatcaacaaagcaagggaccatcaatttctttctggtttcgtgacaggttcccttccatagctctcttcgttgctagtaaat 144  Q
    |||||||||||||||||||| || ||||||||||||||||||||| |||||||||||||||| | |||||||||||| ||| ||||| |||||| |||||    
T  28142683 aggattccagagtggtttgagcaccaaagcaagggaccatcaattactttctggtttcgtgaaaagttcccttccatggctatcttctttgctactaaat 28142782  T
Q  145 caatggataacaagc 159  Q
    | ||  |||||||||    
T  28142783 ccataaataacaagc 28142797  T

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Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 45 - 129
Target Start/End: Original strand, 28239435 - 28239519
Alignment:
Q  45 aggattccagagtggtttgatcaacaaagcaagggaccatcaatttctttctggtttcgtgacaggttcccttccatagctctct 129  Q
    ||||||||||||||||||||||| |||| || |||||   |||||||||| ||||||||| ||| | |||||||||| |||||||    
T  28239435 aggattccagagtggtttgatcatcaaaacatgggacatacaatttctttttggtttcgtaacaagctcccttccatggctctct 28239519  T

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Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 45 - 129
Target Start/End: Original strand, 28246413 - 28246497
Alignment:
Q  45 aggattccagagtggtttgatcaacaaagcaagggaccatcaatttctttctggtttcgtgacaggttcccttccatagctctct 129  Q
    ||||||||||| ||||||||||| ||||||| |||||   |||||||||| ||||||||| ||| | |||||||||| |||||||    
T  28246413 aggattccagattggtttgatcaccaaagcatgggacatacaatttctttttggtttcgtaacaagctcccttccatggctctct 28246497  T

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Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 23 - 129
Target Start/End: Original strand, 28525261 - 28525367
Alignment:
Q  23 gtttagtttggcaggaagtgctaggattccagagtggtttgatcaacaaagcaagggaccatcaatttctttctggtttcgtgacaggttcccttccata 122  Q
    |||| ||||| |||||  ||| ||||||||||||||||||||||| |||| || |||||   |||||||||| ||||||||| |||   ||||||||||     
T  28525261 gttttgtttgccaggatttgcaaggattccagagtggtttgatcaccaaaacatgggacatacaatttctttttggtttcgtaacaacctcccttccatt 28525360  T
Q  123 gctctct 129  Q
    |||||||    
T  28525361 gctctct 28525367  T

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Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 46 - 104
Target Start/End: Original strand, 26805556 - 26805614
Alignment:
Q  46 ggattccagagtggtttgatcaacaaagcaagggaccatcaatttctttctggtttcgt 104  Q
    |||| ||||| |||||||| || ||||||||||||||  ||||||||||||||||||||    
T  26805556 ggataccagattggtttgagcaccaaagcaagggacccacaatttctttctggtttcgt 26805614  T

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Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 49 - 149
Target Start/End: Original strand, 29829103 - 29829203
Alignment:
Q  49 ttccagagtggtttgatcaacaaagcaagggaccatcaatttctttctggtttcgtgacaggttcccttccatagctctcttcgttgctagtaaatcaat 148  Q
    |||||||||||||||| || ||||  | ||| |||||||| ||||| ||||||||| ||| | ||||  ||||| | |||||||||| | ||||||||||    
T  29829103 ttccagagtggtttgagcaccaaaatagggggccatcaatatctttttggtttcgtaacaagctccccaccataaccctcttcgttgtttgtaaatcaat 29829202  T
Q  149 g 149  Q
    |    
T  29829203 g 29829203  T

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Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 104
Target Start/End: Complemental strand, 27715626 - 27715568
Alignment:
Q  46 ggattccagagtggtttgatcaacaaagcaagggaccatcaatttctttctggtttcgt 104  Q
    |||| ||||| |||||||| || ||||||| ||||||  ||||||||||||||||||||    
T  27715626 ggataccagattggtttgagcaccaaagcaggggacccacaatttctttctggtttcgt 27715568  T

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Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 131
Target Start/End: Original strand, 28152278 - 28152364
Alignment:
Q  45 aggattccagagtggtttgatcaacaaagcaagggaccatcaatttctttctggtttcgtgacaggttcccttccatagctctcttc 131  Q
    ||||||||||||| |||| | || || |||| | ||| | |||||||||||||||||| | ||| | |||||||||| |||||||||    
T  28152278 aggattccagagtcgtttaagcaccagagcacgagacaaacaatttctttctggtttcataacaagctcccttccattgctctcttc 28152364  T

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Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 84 - 129
Target Start/End: Complemental strand, 29671593 - 29671548
Alignment:
Q  84 tcaatttctttctggtttcgtgacaggttcccttccatagctctct 129  Q
    ||||||||||||||||||||| ||| ||| ||| ||||||||||||    
T  29671593 tcaatttctttctggtttcgtaacaagtttcctgccatagctctct 29671548  T

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Target: scaffold0038 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 45 - 129
Target Start/End: Original strand, 39597 - 39681
Alignment:
Q  45 aggattccagagtggtttgatcaacaaagcaagggaccatcaatttctttctggtttcgtgacaggttcccttccatagctctct 129  Q
    ||||||||||||||||||||||| |||| || |||||   |||||||||| ||||||||| ||| | |||||||||| |||||||    
T  39597 aggattccagagtggtttgatcatcaaaacatgggacatacaatttctttttggtttcgtaacaagctcccttccatggctctct 39681  T

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Target: scaffold0038; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 45 - 129
Target Start/End: Original strand, 46575 - 46659
Alignment:
Q  45 aggattccagagtggtttgatcaacaaagcaagggaccatcaatttctttctggtttcgtgacaggttcccttccatagctctct 129  Q
    ||||||||||| ||||||||||| ||||||| |||||   |||||||||| ||||||||| ||| | |||||||||| |||||||    
T  46575 aggattccagattggtttgatcaccaaagcatgggacatacaatttctttttggtttcgtaacaagctcccttccatggctctct 46659  T

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Target: scaffold0349 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 104
Target Start/End: Original strand, 16319 - 16377
Alignment:
Q  46 ggattccagagtggtttgatcaacaaagcaagggaccatcaatttctttctggtttcgt 104  Q
    |||| ||||| |||||||| || ||||||| ||||||  ||||||||||||||||||||    
T  16319 ggataccagattggtttgagcaccaaagcaggggacccacaatttctttctggtttcgt 16377  T

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Target: scaffold0019 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 45 - 130
Target Start/End: Complemental strand, 55355 - 55270
Alignment:
Q  45 aggattccagagtggtttgatcaacaaagcaagggaccatcaatttctttctggtttcgtgacaggttcccttccatagctctctt 130  Q
    |||||||||||||||||||| || |||| || |||||   | |||||||| ||||||||| ||| | |||||||||  ||||||||    
T  55355 aggattccagagtggtttgagcaccaaaacatgggacatacgatttctttttggtttcgtaacaagctcccttccacggctctctt 55270  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 100
Target Start/End: Complemental strand, 18652647 - 18652591
Alignment:
Q  44 taggattccagagtggtttgatcaacaaagcaagggaccatcaatttctttctggtt 100  Q
    |||||||||||| ||||| || || ||||||| ||| | ||||||||||||||||||    
T  18652647 taggattccagattggttcgagcatcaaagcaggggtcaatcaatttctttctggtt 18652591  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 100
Target Start/End: Complemental strand, 18676729 - 18676673
Alignment:
Q  44 taggattccagagtggtttgatcaacaaagcaagggaccatcaatttctttctggtt 100  Q
    |||||||||||| ||||| || || ||||||| ||| | ||||||||||||||||||    
T  18676729 taggattccagattggttcgagcatcaaagcaggggtcaatcaatttctttctggtt 18676673  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 100
Target Start/End: Complemental strand, 18686772 - 18686716
Alignment:
Q  44 taggattccagagtggtttgatcaacaaagcaagggaccatcaatttctttctggtt 100  Q
    |||||||||||| ||||| || || ||||||| ||| | ||||||||||||||||||    
T  18686772 taggattccagattggttcgagcatcaaagcaggggtcaatcaatttctttctggtt 18686716  T

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