View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11142_low_58 (Length: 250)
Name: NF11142_low_58
Description: NF11142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11142_low_58 |
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Alignment Details
Target: chr1 (Bit Score: 212; Significance: 1e-116; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 12 - 247
Target Start/End: Original strand, 26073928 - 26074163
Alignment:
| Q |
12 |
agagagagggaacttacaaacgaccatgagccatgtgctctgcaggtgcatgccaatgaagttgtttcaatgaataattcattccatttatagtaatatc |
111 |
Q |
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| T |
26073928 |
agagagagggaacttacaaacgaccatgagccctgtgctctgcaggtgcatgccaatgaagttgtttcaatgaataattcattccatttatattaatatc |
26074027 |
T |
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| Q |
112 |
tcccacttttccttcaaaatgcacctataaataccaaactcaaccatattagttagttaatatcagaattttcctttgacaaaacctttacacttagacc |
211 |
Q |
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| T |
26074028 |
tcccacttttccttcaaaatgcacctataaataccaaactcaaccatattagttagttaatatcagaattttcctttgacaaaacctttacacttagacc |
26074127 |
T |
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| Q |
212 |
ttgctaataataataacaacaacgataatagtaata |
247 |
Q |
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|||||||||||||||| |||||| | |||| ||||| |
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| T |
26074128 |
ttgctaataataataataacaacaacaataataata |
26074163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 12 - 197
Target Start/End: Original strand, 26093601 - 26093786
Alignment:
| Q |
12 |
agagagagggaacttacaaacgaccatgagccatgtgctctgcaggtgcatgccaatgaagttgtttcaatgaataattcattccatttatagtaatatc |
111 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
26093601 |
agagagagggaacttacaaacgaccatgagccctgtgctctgcaggtgcatgccaatgaagttgtttcaatgaataattcattccatttatattaatatc |
26093700 |
T |
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| Q |
112 |
tcccacttttccttcaaaatgcacctataaataccaaactcaaccatattagttagttaatatcagaattttcctttgacaaaacc |
197 |
Q |
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| T |
26093701 |
gcccacttttccttcaaaatgcacctatagataccaaactcaacaatattagttagttgatatcagaattttcctttgacaaaacc |
26093786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 18 - 165
Target Start/End: Original strand, 26105015 - 26105163
Alignment:
| Q |
18 |
agggaacttacaaacgaccatgagccatgtgctctgcaggtgcatgccaatgaagttgtttcaatgaataattcattccatttatagtaatatctcccac |
117 |
Q |
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|||| ||||||||||||||||||||| |||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| ||||||||||||| |
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| T |
26105015 |
aggggacttacaaacgaccatgagccctgtgctctgcaggtgcatgccagtgaagttgtctcaatgaataattcattccatttatgttaatatctcccac |
26105114 |
T |
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| Q |
118 |
ttttccttcaaaatgcacctata-aataccaaactcaaccatattagtt |
165 |
Q |
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||| ||||||||||| ||||||| || ||||||||||||||| |||| |
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| T |
26105115 |
tttaccttcaaaatgtacctatattttaacaaactcaaccatatcagtt |
26105163 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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