View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11142_low_59 (Length: 249)
Name: NF11142_low_59
Description: NF11142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11142_low_59 |
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Alignment Details
Target: chr4 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 48904997 - 48904758
Alignment:
| Q |
1 |
ctgctgcatgctttttctacaatggtcataaattatcctcaaggctctatggacctataaaggaactattatctgaagacaatcctcccaaatacagaga |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48904997 |
ctgctgcatgctttttctacaatggtcataaattatcctcaaggctctatggacctataaaggaactattatctgaagacaatcctcccaaatacagaga |
48904898 |
T |
|
| Q |
101 |
aaccacaattggagactatgcagtctactctccagcagcaaaaagactaggttgtacttctgttctttcacattacaaaatttgaactaagcaatgtgga |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48904897 |
aaccacaattggagactatgcagtctactctccagcagcaaaaagactaggttgtacttctgttctttcacattacaaaatttgaactaagcaatgtgga |
48904798 |
T |
|
| Q |
201 |
gagaaaaaatagctcataaaattccattggtgtgtctgtg |
240 |
Q |
| |
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| |||||||||||||||||| |||||||||||||| |||| |
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|
| T |
48904797 |
gggaaaaaatagctcataaagttccattggtgtgtttgtg |
48904758 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 85; Significance: 1e-40; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 5 - 211
Target Start/End: Original strand, 10769467 - 10769669
Alignment:
| Q |
5 |
tgcatgctttttctacaatggtcataaattatcctcaaggctctatggacctataaaggaactattatctgaagacaatcctcccaaatacagagaaacc |
104 |
Q |
| |
|
|||||| ||||||| || ||||||| | |||||||| |||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| |
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| T |
10769467 |
tgcatgttttttctgcaccggtcataggtcatcctcaaagctctatggacctataaaggaactattatcagaagacaatcctcccatatacagagaaacc |
10769566 |
T |
|
| Q |
105 |
acaattggagactatgcagtctactctccagcagcaaaaagactaggttgtacttctgttctttcacattacaaaatttgaactaagcaatgtggagaga |
204 |
Q |
| |
|
|| ||| ||||||| || ||| | | | ||||||| |||||| | ||||||||| |||| |||||||||| ||||||||||||||||||||| ||| |
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| T |
10769567 |
tcagttgctgactatgtagcctatttt---gaagcaaaaggactagatggtacttctgctcttacacattacaagatttgaactaagcaatgtgga-aga |
10769662 |
T |
|
| Q |
205 |
aaaaata |
211 |
Q |
| |
|
||||||| |
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|
| T |
10769663 |
aaaaata |
10769669 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 39 - 212
Target Start/End: Complemental strand, 1948179 - 1948010
Alignment:
| Q |
39 |
tcaaggctctatggacctataaaggaactattatctgaagacaatcctcccaaatacagagaaaccacaattggagactatgcagtctactctccagcag |
138 |
Q |
| |
|
|||| ||||||||||||||| |||||||||||||| ||| | |||||| ||||||| |||||||||||| ||| || ||||||| ||||| | || |
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|
| T |
1948179 |
tcaaagctctatggacctatgaaggaactattatcagaaaagaatccttccaaatatagagaaaccacagttgctgattatgcagcctacttt---aaag |
1948083 |
T |
|
| Q |
139 |
caaaaagactaggttgtacttctgttctttcacattacaaaatttgaactaagcaatgtggagagaaaaaatag |
212 |
Q |
| |
|
||||| |||||| | ||||||||| |||| |||||||||| |||||||||| ||| |||||| ||||||||||| |
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|
| T |
1948082 |
caaaaggactagatggtacttctgctcttacacattacaagatttgaactaggcagtgtgga-agaaaaaatag |
1948010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 39 - 199
Target Start/End: Original strand, 2051987 - 2052144
Alignment:
| Q |
39 |
tcaaggctctatggacctataaaggaactattatctgaagacaatcctcccaaatacagagaaaccacaattggagactatgcagtctactctccagcag |
138 |
Q |
| |
|
|||| ||||||||||||||| |||||||| |||| ||||||||||||||||||||||||||||| | ||| || |||| || ||||| || || |
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| T |
2051987 |
tcaaagctctatggacctatgaaggaactgctatcagaagacaatcctcccaaatacagagaaacttctgttgctgattatgtagcctactttc---gag |
2052083 |
T |
|
| Q |
139 |
caaaaagactaggttgtacttctgttctttcacattacaaaatttgaactaagcaatgtgg |
199 |
Q |
| |
|
||||| |||||| | ||||||||| |||| |||||||||| |||||||||||||||||||| |
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|
| T |
2052084 |
caaaaggactagatggtacttctgctcttacacattacaagatttgaactaagcaatgtgg |
2052144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 39 - 189
Target Start/End: Original strand, 2029854 - 2030001
Alignment:
| Q |
39 |
tcaaggctctatggacctataaaggaactattatctgaagacaatcctcccaaatacagagaaaccacaattggagactatgcagtctactctccagcag |
138 |
Q |
| |
|
|||| ||||||||||||||| |||||||||||||| ||| ||||||||||||||||||||||||||||| ||| || | ||||| ||||| | | |
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|
| T |
2029854 |
tcaaagctctatggacctatgaaggaactattatcagaaaacaatcctcccaaatacagagaaaccacagttgctgattttgcagcctacttt---aatg |
2029950 |
T |
|
| Q |
139 |
caaaaagactaggttgtacttctgttctttcacattacaaaatttgaacta |
189 |
Q |
| |
|
||||| |||||| | ||||||||| |||| |||||||||| |||||||||| |
|
|
| T |
2029951 |
caaaaggactagatggtacttctgctcttacacattacaagatttgaacta |
2030001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 35 - 103
Target Start/End: Original strand, 2034768 - 2034836
Alignment:
| Q |
35 |
atcctcaaggctctatggacctataaaggaactattatctgaagacaatcctcccaaatacagagaaac |
103 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |
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|
| T |
2034768 |
atcctcaaagctctatggacctataaaggaactattatcagaagacaatcctcctaaatacagagaaac |
2034836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 6 - 107
Target Start/End: Original strand, 2038817 - 2038918
Alignment:
| Q |
6 |
gcatgctttttctacaatggtcataaattatcctcaaggctctatggacctataaaggaactattatctgaagacaatcctcccaaatacagagaaacca |
105 |
Q |
| |
|
||||||||||||| || |||||| | |||||||| |||||||||||| |||||||| |||||||| |||||||||||||| |||||||||||||||| |
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|
| T |
2038817 |
gcatgctttttctccacaggtcattggtcatcctcaaagctctatggaccaataaaggatctattatcagaagacaatcctcctaaatacagagaaacca |
2038916 |
T |
|
| Q |
106 |
ca |
107 |
Q |
| |
|
|| |
|
|
| T |
2038917 |
ca |
2038918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 39 - 120
Target Start/End: Original strand, 2048093 - 2048174
Alignment:
| Q |
39 |
tcaaggctctatggacctataaaggaactattatctgaagacaatcctcccaaatacagagaaaccacaattggagactatg |
120 |
Q |
| |
|
|||| ||||||||||||||| || ||||||||||| |||||||||||||| |||||||||||||||||| ||| |||||||| |
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|
| T |
2048093 |
tcaaagctctatggacctatgaaagaactattatcagaagacaatcctcctaaatacagagaaaccacagttgcagactatg |
2048174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 45 - 103
Target Start/End: Original strand, 2059054 - 2059112
Alignment:
| Q |
45 |
ctctatggacctataaaggaactattatctgaagacaatcctcccaaatacagagaaac |
103 |
Q |
| |
|
||||||||||| || |||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
2059054 |
ctctatggaccaatgaaggaactattatcagaagacaatcctcccaaatacagagaaac |
2059112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 35 - 199
Target Start/End: Original strand, 2055840 - 2056004
Alignment:
| Q |
35 |
atcctcaaggctctatggacctataaaggaactattatctgaagacaatcctcccaaatacagagaaaccacaattggagactatgcagtctact-ctcc |
133 |
Q |
| |
|
|||||||| |||||||||||| || |||||||| ||||| |||||||||||||| ||||||| |||||| || ||| || |||| || ||||| || |
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|
| T |
2055840 |
atcctcaaagctctatggaccaatgaaggaactgttatcagaagacaatcctcctaaatacaaagaaactactgttgctgattatgtagcctactacttt |
2055939 |
T |
|
| Q |
134 |
agcagcaaaaagactaggttgtacttctgttctttcacattacaaaatttgaactaagcaatgtgg |
199 |
Q |
| |
|
| ||||||| || ||| | ||||||||| ||| ||||||||||||||||||| |||||||||| |
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|
| T |
2055940 |
cg-agcaaaaggagtagatggtacttctgcacttgaacattacaaaatttgaactgagcaatgtgg |
2056004 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 51 - 102
Target Start/End: Complemental strand, 28782926 - 28782875
Alignment:
| Q |
51 |
ggacctataaaggaactattatctgaagacaatcctcccaaatacagagaaa |
102 |
Q |
| |
|
||||||||||| ||| | ||||| |||||||||||||||||||||| ||||| |
|
|
| T |
28782926 |
ggacctataaaagaatttttatcagaagacaatcctcccaaatacaaagaaa |
28782875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 106
Target Start/End: Complemental strand, 28734976 - 28734918
Alignment:
| Q |
48 |
tatggacctataaaggaactattatctgaagacaatcctcccaaatacagagaaaccac |
106 |
Q |
| |
|
||||||||||||| ||| ||||||| |||||||| ||||||| ||| ||||||||||| |
|
|
| T |
28734976 |
tatggacctataacagaattattatcagaagacaaccctcccagatatagagaaaccac |
28734918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 106
Target Start/End: Complemental strand, 28742113 - 28742051
Alignment:
| Q |
44 |
gctctatggacctataaaggaactattatctgaagacaatcctcccaaatacagagaaaccac |
106 |
Q |
| |
|
|||||||||||||||||| ||| | ||||| |||||||| ||||| | ||| ||||||||||| |
|
|
| T |
28742113 |
gctctatggacctataaaagaaattttatcagaagacaaccctccaagatatagagaaaccac |
28742051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 60 - 103
Target Start/End: Complemental strand, 16441803 - 16441760
Alignment:
| Q |
60 |
aaggaactattatctgaagacaatcctcccaaatacagagaaac |
103 |
Q |
| |
|
||||||||||||||||||||||||||| | ||||| |||||||| |
|
|
| T |
16441803 |
aaggaactattatctgaagacaatcctgcaaaatatagagaaac |
16441760 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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