View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11142_low_60 (Length: 249)
Name: NF11142_low_60
Description: NF11142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11142_low_60 |
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Alignment Details
Target: chr1 (Bit Score: 107; Significance: 9e-54; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 5 - 170
Target Start/End: Complemental strand, 9579493 - 9579330
Alignment:
| Q |
5 |
gattgtcgacagtgtcaagcttttatcattaagttggttgagaataaattcgtcaaagtttatgtatggattgaaccagtggtggtcgaacccgctagta |
104 |
Q |
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| T |
9579493 |
gattgtcgatagtgtcaatcttttatcatcgagttggttgagattaaagtcgtcaaagtttatgtatggattgaaccagtggtggtcgaacccgctagca |
9579394 |
T |
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| Q |
105 |
tgcttaggggtattgggggatgtttgttattgctaaatatgtgcatattattggaagcggttttgt |
170 |
Q |
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| T |
9579393 |
tgcttaggggtatcagtggatgtttgtttttgctaaatatgtgc--attattggaagcagttttgt |
9579330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 9585035 - 9584775
Alignment:
| Q |
1 |
aattgattgtcgacagtgtcaagcttttatcattaagttggttgagaataaattcgtcaaagtttatgtatgga---ttgaaccagtggtggtcgaaccc |
97 |
Q |
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| T |
9585035 |
aattgcttgtccatagtgtcaagcttttatcattgagttggttgagattaaagtcgtcaaagtttatgtatggaatattgaaccagtggtggtcgaaccc |
9584936 |
T |
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| Q |
98 |
gctagtatgcttaggggtattgggggatgtttgttattgctaaatatgtgcatattattggaagcgg----------------------ttttgtgctat |
175 |
Q |
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| T |
9584935 |
gctagcatgcttaggggtatcgggggatgtttgtttttgctaaatatttgc--attcttggaagcggttttgtgggggtggctgcgttgttttgtgctat |
9584838 |
T |
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| Q |
176 |
ctgtttgcagtgatgcagtcgctgcgttctgctattgatagtttgtaaattatatcctttctc |
238 |
Q |
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| T |
9584837 |
ctatttccagtgatgcagtcgctgcgttctgctattgttggtttgtaaattatatcctttctc |
9584775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 164 - 238
Target Start/End: Complemental strand, 9579306 - 9579232
Alignment:
| Q |
164 |
gttttgtgctatctgtttgcagtgatgcagtcgctgcgttctgctattgatagtttgtaaattatatcctttctc |
238 |
Q |
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| T |
9579306 |
gttttgtgctatctgtttgcagtgatgcagtcgctgcgttctgctattgttggtttgtcaattatatcctttctc |
9579232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 12 - 169
Target Start/End: Original strand, 32718787 - 32718940
Alignment:
| Q |
12 |
gacagtgtcaagcttttatcattaagttggttgagaataaattcgtcaaagtttatgtatggattgaaccagtggtggtcgaacccgctagtatgcttag |
111 |
Q |
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| T |
32718787 |
gacagtgtcaagcttttatcgtggagttggcagagattagagtcgtcaaagtttaagtatgatttgaa--agtgctggttgaaccctctagcatgcttag |
32718884 |
T |
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| Q |
112 |
gggtattgggggatgtttgttattgctaaatatgtgcatattattggaagcggttttg |
169 |
Q |
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| T |
32718885 |
aggtatcaggggatgtttgttctcgctaaatatgtgc--tttgttggaagcggttttg |
32718940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 174 - 211
Target Start/End: Original strand, 32718975 - 32719012
Alignment:
| Q |
174 |
atctgtttgcagtgatgcagtcgctgcgttctgctatt |
211 |
Q |
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| T |
32718975 |
atctgtttgcagtgattcaatcgctgcgttctgctatt |
32719012 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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