View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11142_low_61 (Length: 247)
Name: NF11142_low_61
Description: NF11142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11142_low_61 |
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Alignment Details
Target: chr6 (Bit Score: 128; Significance: 3e-66; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 24 - 224
Target Start/End: Complemental strand, 32368727 - 32368524
Alignment:
| Q |
24 |
aaatttggatacatcctataatcaaatcataagcaatacaacatgcaattacaacaaaacataatacttaataaaaaa-gcaaccaacaacacacctacc |
122 |
Q |
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| T |
32368727 |
aaatttggatacatcctataatcaaatcataagcaatacaacatgcaattacaagaaaacataatacttaataaaaaatacaaccaacaacac----act |
32368632 |
T |
|
| Q |
123 |
tacctacctacattactcattgagattatcagtagaaacaagtgtatgtgtcctcatcatcaccat------cataaactgcttcctgtattttccatat |
216 |
Q |
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||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| ||| ||| ||||||||||||||||||| |||| |
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| T |
32368631 |
tacctacctacattactcactgagattatcagcagaaacaagtgtatgtgtcctcatcatcatcatcatcaacatcaactgcttcctgtattttcgatat |
32368532 |
T |
|
| Q |
217 |
gatacact |
224 |
Q |
| |
|
|||||||| |
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|
| T |
32368531 |
gatacact |
32368524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 1 - 153
Target Start/End: Complemental strand, 32371056 - 32370908
Alignment:
| Q |
1 |
caaataaaattgtagtactaaacaaatttggatacatcctataatcaaatcataagcaatacaacatgcaattacaacaaaacataatacttaataaaaa |
100 |
Q |
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||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
32371056 |
caaataacattatagtactaaacaaatttggatacatcctataatcaaatcataagcaatacaacatgcaattacaacaaaacataatacttaaaaaaaa |
32370957 |
T |
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| Q |
101 |
agcaaccaacaacacacctacctacctacctacattactcattgagattatca |
153 |
Q |
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|
| T |
32370956 |
agcaaccaacaacatacctacctac----ctacattactcactgagattatca |
32370908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 42 - 224
Target Start/End: Complemental strand, 32370693 - 32370509
Alignment:
| Q |
42 |
taatcaaatcataagcaatacaacatgcaattacaacaaaacataatacttaataaaaaagcaaccaacaacacacctacctacctacctacattactca |
141 |
Q |
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||||||||||||||||||||||||||||||||||||||| | ||||||||| |||||||||||||||||||||||| ||||||| |||||||||||| |
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| T |
32370693 |
taatcaaatcataagcaatacaacatgcaattacaacaatatataatacttgataaaaaagcaaccaacaacacacttacctac----ctacattactca |
32370598 |
T |
|
| Q |
142 |
ttgagattatcagtagaaacaagtgtatgtgtcctcatc------atcaccatcataaactgcttcctgtattttccatatgatacact |
224 |
Q |
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| T |
32370597 |
ctgagattatcagcagaaacaagtgtatgtgtcctcatcatcattatcatcatcatcaactgcttcctgtattttcgatatgatacact |
32370509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 35 - 189
Target Start/End: Complemental strand, 32355978 - 32355835
Alignment:
| Q |
35 |
catcctataatcaaatcataagcaatacaacatgcaattacaacaaaacataatacttaataaaaaagcaaccaacaacacacctacctacctacctaca |
134 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || ||||||||| |||| ||||||||||| |
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| T |
32355978 |
catcctataatcaaatcataagcaatacaacatgcaattacaacaaaacttaatacttaataaaacagtaaccaacaa-acac------acctacctaca |
32355886 |
T |
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| Q |
135 |
ttactcattgagattatcagtagaaacaagtgtatgtgtcctcatcatcaccatc |
189 |
Q |
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||| ||| |||||||||||| || |||||| ||||||||||||||||||||| |
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|
| T |
32355885 |
ttattcactgagattatcagcag----aagtgtctgtgtcctcatcatcaccatc |
32355835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 193 - 230
Target Start/End: Complemental strand, 32370881 - 32370844
Alignment:
| Q |
193 |
aactgcttcctgtattttccatatgatacactgctaca |
230 |
Q |
| |
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|||||||||||||||||||||||||||||||| ||||| |
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|
| T |
32370881 |
aactgcttcctgtattttccatatgatacactcctaca |
32370844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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