View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11142_low_69 (Length: 238)
Name: NF11142_low_69
Description: NF11142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11142_low_69 |
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Alignment Details
Target: chr3 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 32431473 - 32431251
Alignment:
| Q |
1 |
tgtgtaaatttagtcattttaaattattatcgtattttgatgtaaatttctaatagtttaatcattttaaattattatcgaattttgatgtaaatttgtg |
100 |
Q |
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| T |
32431473 |
tgtgtaaatttggtcattttaaattattatcgtattttgatgtaaatttctaatagtttaatcattttaaattattatcgaattttgatgtaaatttgtg |
32431374 |
T |
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| Q |
101 |
tatgagagtattatttctatcatatataatttcatattcaaatatgataccagcccttaattaaagagttgttggaatttacagctaggaggcccttcat |
200 |
Q |
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| T |
32431373 |
tatcagagtattatttctatcatatgtaatttcacattccaatatgataccagcccttaattaaagagttgttggaatttacagctaggaggcccttcat |
32431274 |
T |
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| Q |
201 |
gggatgtaggattgggaagaagg |
223 |
Q |
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|||||||||| |||||||||||| |
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| T |
32431273 |
gggatgtaggcttgggaagaagg |
32431251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 168 - 223
Target Start/End: Complemental strand, 32424218 - 32424163
Alignment:
| Q |
168 |
gttgttggaatttacagctaggaggcccttcatgggatgtaggattgggaagaagg |
223 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| |
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| T |
32424218 |
gttgttggaatttacagctaggaggcccttcatggaatgtaggcttgggaagaagg |
32424163 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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