View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11142_low_7 (Length: 560)
Name: NF11142_low_7
Description: NF11142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11142_low_7 |
 | |
|
| [»] scaffold0719 (1 HSPs) |
| | |
|
| [»] scaffold0272 (1 HSPs) |
| | |
|
| [»] scaffold0016 (2 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 522; Significance: 0; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 522; E-Value: 0
Query Start/End: Original strand, 1 - 542
Target Start/End: Complemental strand, 31528177 - 31527636
Alignment:
| Q |
1 |
tactagctcagaaatgtgaaacaaaacaaacgggactaagcaatgataccttgctcagcaagttagttttctcttgggttaactctttgcttagtttagg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31528177 |
tactagctcagaaatgtgaaacaaaacaaacgggactaagcaatgctaccttgctcagcaagttagttttctcttgggttaactctttgcttagtttagg |
31528078 |
T |
|
| Q |
101 |
atactcaaagccactagctcttgaagacgtacctacccttgattctgaagatgaagcaaacactgcgtatcaaaattttgtgcatgaataggagtctctt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
31528077 |
atactcaaagccactagctcttgaagacatacctacccttgtttctgaagatgaagcaaacactgcgtatcaaaattttgtgcatgaatgggagtctctt |
31527978 |
T |
|
| Q |
201 |
ggaaggaagaggagtaagaacagtacaaaaaatttggttctttggtctatagttaaaacttacttacaagaaaacatattaatagcattctatgcactac |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31527977 |
ggaaggaagaggagtaagaacagtacaaaaaatttggttctttggtctatagttaaaacttacttacaagaaaacatattaatagcattctatgcactac |
31527878 |
T |
|
| Q |
301 |
tcagaactatttctgttgtagtttcacctctaattctctatgcttttgttaactactcaagtagaaccgagggaaatctcagagaaggtctttccatagt |
400 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31527877 |
tcagaactatttctgttgtagttttacctctaattctctatgcttttgttaactactcaagtagaaccgagggaaatctcagagaaggtctttccatagt |
31527778 |
T |
|
| Q |
401 |
tggttttctgattctcaccaaattagtcgagtctttttcccagagacattggttttttaactcaaggaggttaggaatgaaaatgagatcagctctgatg |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31527777 |
tggttttctgattctcaccaaattagtcgagtctttttcccagagacattggttttttaactcaaggaggttaggaatgaaaatgagatcagctctgatg |
31527678 |
T |
|
| Q |
501 |
gtggcagtttatgagaagcagctaaagctttctagctcggga |
542 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31527677 |
gtggcagtttatgagaagcagctaaagctttctagctcggga |
31527636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 278 - 360
Target Start/End: Complemental strand, 21177788 - 21177706
Alignment:
| Q |
278 |
attaatagcattctatgcactactcagaactatttctgttgtagtttcacctctaattctctatgcttttgttaactactcaa |
360 |
Q |
| |
|
|||||| ||||| |||||| || |||||||||| |||||| |||||||||||||||| ||||||||| ||||||||||||||| |
|
|
| T |
21177788 |
attaatggcattttatgcattaatcagaactatatctgttttagtttcacctctaatactctatgctattgttaactactcaa |
21177706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 233 - 341
Target Start/End: Complemental strand, 21260199 - 21260087
Alignment:
| Q |
233 |
tttggttctttggtctatagttaaaacttacttacaa----gaaaacatattaatagcattctatgcactactcagaactatttctgttgtagtttcacc |
328 |
Q |
| |
|
||||||||||||||||||||||| |||||||| | || ||||||| ||||| || ||| |||||| ||| |||||||||| ||||||||||| ||| |
|
|
| T |
21260199 |
tttggttctttggtctatagttagaacttactaaaaattaagaaaacacattaaaagtattttatgcattacacagaactattgttgttgtagtttgacc |
21260100 |
T |
|
| Q |
329 |
tctaattctctat |
341 |
Q |
| |
|
|||||| |||||| |
|
|
| T |
21260099 |
tctaatactctat |
21260087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 273 - 367
Target Start/End: Complemental strand, 21264026 - 21263931
Alignment:
| Q |
273 |
aacatattaatagcattctatgcactactcagaactatttctgttgtagtttcacctctaattctctatgcttttgttaact-actcaagtagaac |
367 |
Q |
| |
|
||||||||||||||||| |||| | || |||||||||||||| ||||||||||||||||||| ||||| || ||||| ||| |||||| |||||| |
|
|
| T |
21264026 |
aacatattaatagcattttatgaattaatcagaactatttctattgtagtttcacctctaatcttctattctattgttgactaactcaaatagaac |
21263931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 273 - 367
Target Start/End: Complemental strand, 21297880 - 21297786
Alignment:
| Q |
273 |
aacatattaatagcattctatgcactactcagaactatttctgttgtagtttcacctctaattctctatgcttttgttaactactcaagtagaac |
367 |
Q |
| |
|
||||||||||||||| | |||||| | |||||||||| |||||||||||||||| |||||| | || || ||||||| ||||||| |||||| |
|
|
| T |
21297880 |
aacatattaatagcagtttatgcataaatcagaactatctctgttgtagtttcacatctaatattatactctattgttaattactcaaatagaac |
21297786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 97 - 181
Target Start/End: Complemental strand, 21109382 - 21109298
Alignment:
| Q |
97 |
taggatactcaaagccactagctcttgaagacgtacctacccttgattctgaagatgaagcaaacactgcgtatcaaaattttgt |
181 |
Q |
| |
|
|||| |||||||||||||||| ||||||||| || | |||||| || ||||||||||||||||| || |||||||| ||||| |
|
|
| T |
21109382 |
taggttactcaaagccactagttcttgaagaagtcgattcccttgtttttgaagatgaagcaaacagggcttatcaaaaatttgt |
21109298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 226; Significance: 1e-124; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 3 - 540
Target Start/End: Complemental strand, 5284678 - 5284141
Alignment:
| Q |
3 |
ctagctcagaaatgtgaaacaaaacaaacgggactaagcaatgataccttgctcagcaagttagttttctcttgggttaactctttgcttagtttaggat |
102 |
Q |
| |
|
|||||||||||| ||||||||||||||| |||||| || ||| ||| || ||||||||||| |||||||||||||||| ||| | || || ||||| | |
|
|
| T |
5284678 |
ctagctcagaaagttgaaacaaaacaaacaggactaggccatgctacttttctcagcaagttgattttctcttgggttaattctctactcagattaggtt |
5284579 |
T |
|
| Q |
103 |
actcaaagccactagctcttgaagacgtacctacccttgattctgaagatgaagcaaacactgcgtatcaaaattttgtgcatgaataggagtctcttgg |
202 |
Q |
| |
|
||||||||||||||| |||||||||| ||||| |||||| |||||||||||||||| ||| || |||||||| || || | || | ||| || |||| |
|
|
| T |
5284578 |
actcaaagccactagatcttgaagacataccttcccttgtttctgaagatgaagcagacatggcttatcaaaaattcgttcgtgcttgggaatcacttgt |
5284479 |
T |
|
| Q |
203 |
aaggaagaggagtaagaacagtacaaaaaatttggttctttggtctatagttaaaacttacttacaagaaaacatattaatagcattctatgcactactc |
302 |
Q |
| |
|
|| | | || ||||| | |||||| | ||||||||||||||||||| ||| ||||| |||| |||||||||||||||||||||| |||||| || || |
|
|
| T |
5284478 |
tagagacaagacaaagaataatacaaagagtttggttctttggtctataattagaactttcttaaaagaaaacatattaatagcattttatgcattaatc |
5284379 |
T |
|
| Q |
303 |
agaactatttctgttgtagtttcacctctaattctctatgcttttgttaactactcaagtagaaccgagggaaatctcagagaaggtctttccatagttg |
402 |
Q |
| |
|
||||||||||||| ||||||||||||||| || || |||||||||||||||||||||| |||||| |||| | |||||| | |||||||||||||||||| |
|
|
| T |
5284378 |
agaactatttctgctgtagtttcacctcttatactttatgcttttgttaactactcaaatagaactgaggcagatctcaaacaaggtctttccatagttg |
5284279 |
T |
|
| Q |
403 |
gttttctgattctcaccaaattagtcgagtctttttcccagagacattggttttttaactcaaggaggttaggaatgaaaatgagatcagctctgatggt |
502 |
Q |
| |
|
|| || | ||||| ||||||||||| || ||| | || || |||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| |
|
|
| T |
5284278 |
gtattttaattctaaccaaattagttgattctctgtctcaaagacattggttttttaactcaaggaggtcaggaatgaaaatgagatcagctcttatggt |
5284179 |
T |
|
| Q |
503 |
ggcagtttatgagaagcagctaaagctttctagctcgg |
540 |
Q |
| |
|
|||| ||||| | ||||| ||||||||||||||||||| |
|
|
| T |
5284178 |
ggcaatttatcaaaagcaactaaagctttctagctcgg |
5284141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 8 - 536
Target Start/End: Original strand, 5304930 - 5305458
Alignment:
| Q |
8 |
tcagaaatgtgaaacaaaacaaacgggactaagcaatgataccttgctcagcaagttagttttctcttgggttaactctttgcttagtttaggatactca |
107 |
Q |
| |
|
||||||| ||||||||||||||| |||||| || || |||||| |||||||||||| |||||||||||||||| ||||| || ||||| || |||||| |
|
|
| T |
5304930 |
tcagaaagttgaaacaaaacaaacaggactaggctgtgctacctttctcagcaagttaattttctcttgggttaattctttactcagttttggttactca |
5305029 |
T |
|
| Q |
108 |
aagccactagctcttgaagacgtacctacccttgattctgaagatgaagcaaacactgcgtatcaaaattttgtgcatgaataggagtctcttggaagga |
207 |
Q |
| |
|
|||||| ||| |||||||||| ||||| |||||| |||||||||||||||| ||| || ||| |||| ||||| |||| | ||| || |||| || |
|
|
| T |
5305030 |
aagccattagatcttgaagacataccttcccttgtttctgaagatgaagcagacatggcttataaaaaatttgttcatgcttgggaatcacttgttagag |
5305129 |
T |
|
| Q |
208 |
agaggagtaagaacagtacaaaaaatttggttctttggtctatagttaaaacttacttacaagaaaacatattaatagcattctatgcactactcagaac |
307 |
Q |
| |
|
|||||| ||||| | |||||| | ||||||||||||||||||||| | ||||| |||| |||||||||||||||||||||| |||||| || ||||||| |
|
|
| T |
5305130 |
agaggacaaagaataatacaaagagtttggttctttggtctatagtaagaactttcttaaaagaaaacatattaatagcattttatgcattaatcagaac |
5305229 |
T |
|
| Q |
308 |
tatttctgttgtagtttcacctctaattctctatgcttttgttaactactcaagtagaaccgagggaaatctcagagaaggtctttccatagttggtttt |
407 |
Q |
| |
|
|||||| |||| |||||||||| || ||||||||||||||||||||||||| |||||| |||| | |||||| | |||||||| |||||||| ||||| |
|
|
| T |
5305230 |
tatttcggttgccatttcacctcttatactctatgcttttgttaactactcaaatagaactgaggcagatctcaaacaaggtcttaccatagtttgtttt |
5305329 |
T |
|
| Q |
408 |
ctgattctcaccaaattagtcgagtctttttcccagagacattggttttttaactcaaggaggttaggaatgaaaatgagatcagctctgatggtggcag |
507 |
Q |
| |
|
|||||||||| |||| | | |||||||| || ||||||||||||||||| ||||||||||||| |||||||||||||||||||||| |||||| |||| |
|
|
| T |
5305330 |
ctgattctcaacaaagttttggagtctttgtctcagagacattggtttttcaactcaaggaggtcaggaatgaaaatgagatcagctttgatggcagcag |
5305429 |
T |
|
| Q |
508 |
tttatgagaagcagctaaagctttctagc |
536 |
Q |
| |
|
||||| | ||||||||||||||||||||| |
|
|
| T |
5305430 |
tttatcaaaagcagctaaagctttctagc |
5305458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 57 - 540
Target Start/End: Original strand, 15124228 - 15124711
Alignment:
| Q |
57 |
agcaagttagttttctcttgggttaactctttgcttagtttaggatactcaaagccactagctcttgaagacgtacctacccttgattctgaagatgaag |
156 |
Q |
| |
|
|||||||| |||||||||||||||| || || || |||||||| ||||||||||||||||||||||||||| | ||| |||||| |||||||||||||| |
|
|
| T |
15124228 |
agcaagttgattttctcttgggttaattcattactcagtttaggttactcaaagccactagctcttgaagacattccttcccttgtttctgaagatgaag |
15124327 |
T |
|
| Q |
157 |
caaacactgcgtatcaaaattttgtgcatgaataggagtctcttggaaggaagaggagtaagaacagtacaaaaaatttggttctttggtctatagttaa |
256 |
Q |
| |
|
|||||| || ||| |||| ||||| |||| | ||| || |||| || |||||| |||||||| |||||| | ||||||||||||||||||||||| |
|
|
| T |
15124328 |
caaacatggcttataaaaaatttgttcatgcttgggaatcacttgttagagagaggactaagaacaatacaaagagtttggttctttggtctatagttag |
15124427 |
T |
|
| Q |
257 |
aacttacttacaagaaaacatattaatagcattctatgcactactcagaactatttctgttgtagtttcacctctaattctctatgcttttgttaactac |
356 |
Q |
| |
|
| | ||| || |||||||||||||||||||||| |||||| || |||||||||| |||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
15124428 |
atcatacctaaaagaaaacatattaatagcattttatgcattaatcagaactatagctgttgtagtttcacctctaatactctatgcttttgttaactac |
15124527 |
T |
|
| Q |
357 |
tcaagtagaaccgagggaaatctcagagaaggtctttccatagttggttttctgattctcaccaaattagtcgagtctttttcccagagacattggtttt |
456 |
Q |
| |
|
|||| |||||| |||| | |||||| | ||||||||||||||||||||||| || || |||| ||| | | ||||| | || || ||||||||||||| |
|
|
| T |
15124528 |
tcaaatagaactgaggaagatctcaaacaaggtctttccatagttggttttttggttgtcactaaagtctttgagtcggtatctcaaagacattggtttt |
15124627 |
T |
|
| Q |
457 |
ttaactcaaggaggttaggaatgaaaatgagatcagctctgatggtggcagtttatgagaagcagctaaagctttctagctcgg |
540 |
Q |
| |
|
||||||||||||||| ||| |||||||||||||||||||| ||||| ||||||||| | ||||||||||||||||||||||||| |
|
|
| T |
15124628 |
ttaactcaaggaggtcaggtatgaaaatgagatcagctctaatggtagcagtttatcaaaagcagctaaagctttctagctcgg |
15124711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 8 - 532
Target Start/End: Original strand, 5312142 - 5312664
Alignment:
| Q |
8 |
tcagaaatgtgaaacaaaacaaacgggactaagcaatgataccttgctcagcaagttagttttctcttgggttaactctttgcttagtttaggatactca |
107 |
Q |
| |
|
||||||| ||||||||||||||| |||||| || || |||||| ||||||||||| |||||||||||||||| ||||| || |||||||| |||||| |
|
|
| T |
5312142 |
tcagaaagttgaaacaaaacaaacaggactaggccgtgctacctttctcagcaagttgattttctcttgggttaattctttactcagtttaggttactca |
5312241 |
T |
|
| Q |
108 |
aagccactagctcttgaagacgtacctacccttgattctgaagatgaagcaaacactgcgtatcaaaattttgtgcatgaataggagtctcttggaagga |
207 |
Q |
| |
|
|||||| ||| |||||||||| ||||| |||||| |||||||||||||||| ||| | |||||||| |||| ||||| || ||| || |||| ||| |
|
|
| T |
5312242 |
aagccattagatcttgaagacataccttcccttgcttctgaagatgaagcagacatgacatatcaaaactttgcgcatgcatgggattcccttgtaagag |
5312341 |
T |
|
| Q |
208 |
agaggagtaagaacagtacaaaaaatttggttctttggtctatagttaaaacttacttacaagaaaacatattaatagcattctatgcactactcagaac |
307 |
Q |
| |
|
||| || | || | | | | | ||||||||||||||| | ||| |||||||||| ||||||||||| |||||||||| |||||| || ||||||| |
|
|
| T |
5312342 |
agaagacagataaaaattccaggagcttggttctttggtctgttattagaacttacttaaaagaaaacatagtaatagcattttatgcattaatcagaac |
5312441 |
T |
|
| Q |
308 |
tatttctgttgtagtttcacctctaattctctatgcttttgttaactactcaagtagaaccgagggaaatctcagagaaggtctttccatagttggtttt |
407 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||| ||| |||||| |||| | |||||| | |||||||||| |||||||||||| |
|
|
| T |
5312442 |
tatttctgttgtagtttcacctctaatactctatgcttttgttaactacgcaaatagaactgaggcagatctcaaacaaggtctttcaatagttggtttt |
5312541 |
T |
|
| Q |
408 |
ctgattctcaccaaattagtcgagtctttttcccagagacattggttttttaactcaaggaggttaggaatgaaaatgagatcagctctgatggtggcag |
507 |
Q |
| |
|
||||||||||||||||| ||||||||| | || || |||||||||||||| ||||||||||| |||||||||||||||||||||| |||||||||||| |
|
|
| T |
5312542 |
ctgattctcaccaaattggtcgagtctctgtctcaacgacattggtttttt--ctcaaggaggtcaggaatgaaaatgagatcagctttgatggtggcag |
5312639 |
T |
|
| Q |
508 |
tttatgagaagcagctaaagctttc |
532 |
Q |
| |
|
||||| ||||||||||||||||| |
|
|
| T |
5312640 |
tttatcgaaagcagctaaagctttc |
5312664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 3 - 540
Target Start/End: Complemental strand, 14951493 - 14950955
Alignment:
| Q |
3 |
ctagctcagaaatgtgaaacaaaacaaacgggactaagcaatgataccttgctcagcaagttagttttctcttgggttaactctttgcttagtttaggat |
102 |
Q |
| |
|
|||||||||||| ||||||||||||||| | |||||| ||| ||| || ||||||||||| |||||||||||||||||||| | || |||||||| | |
|
|
| T |
14951493 |
ctagctcagaaagttgaaacaaaacaaacagaactaagtcatgctacttttctcagcaagttgattttctcttgggttaactctctactcagtttaggtt |
14951394 |
T |
|
| Q |
103 |
actcaaagccactagctcttgaagacgtacctacccttgattctgaagatgaagcaaacactgcgtatcaaaattttgtgcatgaataggagtctcttgg |
202 |
Q |
| |
|
|| ||||| | |||||||||||||| | ||| | |||| |||||||||||||||| ||| || |||||||| |||| ||| | || ||| || |||| |
|
|
| T |
14951393 |
acacaaaggctttagctcttgaagacattccttctcttgtttctgaagatgaagcagacatggcctatcaaaaatttgcgcaagcatgggaatcccttgt |
14951294 |
T |
|
| Q |
203 |
aaggaagaggagtaagaacagtacaaaaaatttggttctttggtctatagttaaaacttacttacaagaaaacatattaatagcattctatgcactactc |
302 |
Q |
| |
|
||| | |||| ||||||| ||| || | ||||||||||||||||||||||| | ||||| || |||||||||||||||||||||| |||||| || || |
|
|
| T |
14951293 |
aagagaaaggactaagaacgatacgaagagtttggttctttggtctatagttagatcttacctaaaagaaaacatattaatagcattttatgcattaatc |
14951194 |
T |
|
| Q |
303 |
agaactatttctgttgtagtttcacctctaattctctatgcttttgttaactactcaagtagaaccgagggaaatctcagagaaggtctttccatagttg |
402 |
Q |
| |
|
|||||||| ||||||||||||||||||| || ||||||||||||||||||||||||| |||||| |||| | |||||| | |||||||||||||||||| |
|
|
| T |
14951193 |
agaactatagctgttgtagtttcacctctgatactctatgcttttgttaactactcaaatagaactgaggaagatctcaaacaaggtctttccatagttg |
14951094 |
T |
|
| Q |
403 |
gttttctgattctcaccaaattagtcgagtctttttcccagagacattggttttttaactc-aaggaggttaggaatgaaaatgagatcagctctgatgg |
501 |
Q |
| |
|
||||| || || |||| ||| | | |||||| | || || |||||||||||||||||||| || ||||| ||| |||||||||||||||||||| |||| |
|
|
| T |
14951093 |
gttttttggttgtcactaaagtctttgagtctctgtctcaaagacattggttttttaactcaaaagaggtcaggtatgaaaatgagatcagctctaatgg |
14950994 |
T |
|
| Q |
502 |
tggcagtttatgagaagcagctaaagctttctagctcgg |
540 |
Q |
| |
|
| ||||||||| | ||||||||||||||||| ||||||| |
|
|
| T |
14950993 |
tagcagtttatcaaaagcagctaaagctttcaagctcgg |
14950955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 68 - 540
Target Start/End: Complemental strand, 5292108 - 5291636
Alignment:
| Q |
68 |
tttctcttgggttaactctttgcttagtttaggatactcaaagccactagctcttgaagacgtacctacccttgattctgaagatgaagcaaacactgcg |
167 |
Q |
| |
|
|||||||||| |||| ||||| || |||||||| ||||||||||| || | ||||||||| ||||| || ||| ||||||||||||||| ||| || |
|
|
| T |
5292108 |
tttctcttggattaattctttactcagtttaggttactcaaagccgcttgatcttgaagatataccttccgttgtttctgaagatgaagctgacatgtcg |
5292009 |
T |
|
| Q |
168 |
tatcaaaattttgtgcatgaataggagtctcttggaaggaagaggagtaagaacagtacaaaaaatttggttctttggtctatagttaaaacttacttac |
267 |
Q |
| |
|
|||||||| ||||| ||| | ||| || |||| || |||||| ||||| | |||||| | ||||||||||||||||||||||| ||||| ||| |
|
|
| T |
5292008 |
tatcaaaaatttgttaatgcttgggaatcacttgtgagagagaggacaaagaataatacaaagagtttggttctttggtctatagttagaactttcttga |
5291909 |
T |
|
| Q |
268 |
aagaaaacatattaatagcattctatgcactactcagaactatttctgttgtagtttcacctctaattctctatgcttttgttaactactcaagtagaac |
367 |
Q |
| |
|
|||||||||||||||||||||| |||||| || | |||||| |||| |||| |||||||||||| || ||||||||||||||||||||||||| |||||| |
|
|
| T |
5291908 |
aagaaaacatattaatagcattttatgcattaataagaactgtttcggttgcagtttcacctcttatactctatgcttttgttaactactcaaatagaac |
5291809 |
T |
|
| Q |
368 |
cgagggaaatctcagagaaggtctttccatagttggttttctgattctcaccaaattagtcgagtctttttcccagagacattggttttttaactcaagg |
467 |
Q |
| |
|
||||| | |||||| | |||||||||||||||||||| || |||||||||||||| | | |||||||| || || || ||||||||||||||||||||| |
|
|
| T |
5291808 |
cgaggcagatctcaaacaaggtctttccatagttggtattttgattctcaccaaagtttttgagtctttatctcaaaggcattggttttttaactcaagg |
5291709 |
T |
|
| Q |
468 |
aggttaggaatgaaaatgagatcagctctgatggtggcagtttatgagaagcagctaaagctttctagctcgg |
540 |
Q |
| |
|
|||| |||||||||||||||||||||||| |||||||| ||||| |||||| |||||||||||||||||| |
|
|
| T |
5291708 |
aggtcaggaatgaaaatgagatcagctcttatggtggcggtttaccgaaagcagttaaagctttctagctcgg |
5291636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0719 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0719
Description:
Target: scaffold0719; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 235 - 287
Target Start/End: Complemental strand, 5951 - 5899
Alignment:
| Q |
235 |
tggttctttggtctatagttaaaacttacttacaagaaaacatattaatagca |
287 |
Q |
| |
|
|||||||||||||| |||||| |||| ||||| ||||||||||| |||||||| |
|
|
| T |
5951 |
tggttctttggtctctagttagaactaacttaaaagaaaacataataatagca |
5899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0272 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0272
Description:
Target: scaffold0272; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 319 - 367
Target Start/End: Complemental strand, 19962 - 19914
Alignment:
| Q |
319 |
tagtttcacctctaattctctatgcttttgttaactactcaagtagaac |
367 |
Q |
| |
|
|||||||||||||||| |||||| || |||||||||| |||| |||||| |
|
|
| T |
19962 |
tagtttcacctctaatactctatactattgttaactaatcaaatagaac |
19914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016 (Bit Score: 29; Significance: 0.0000008; HSPs: 2)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 319 - 367
Target Start/End: Original strand, 39775 - 39823
Alignment:
| Q |
319 |
tagtttcacctctaattctctatgcttttgttaactactcaagtagaac |
367 |
Q |
| |
|
|||||||||||||||| |||||| || |||||||||| |||| |||||| |
|
|
| T |
39775 |
tagtttcacctctaatactctatactattgttaactaatcaaatagaac |
39823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 235 - 287
Target Start/End: Original strand, 61275 - 61327
Alignment:
| Q |
235 |
tggttctttggtctatagttaaaacttacttacaagaaaacatattaatagca |
287 |
Q |
| |
|
|||||||||||| | |||||| |||| ||||| ||||||||||| |||||||| |
|
|
| T |
61275 |
tggttctttggtttgtagttagaactaacttaaaagaaaacataataatagca |
61327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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