View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11142_low_70 (Length: 238)

Name: NF11142_low_70
Description: NF11142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11142_low_70
NF11142_low_70
[»] chr7 (5 HSPs)
chr7 (18-201)||(37730593-37730777)
chr7 (34-75)||(34853341-34853382)
chr7 (34-75)||(42344221-42344262)
chr7 (39-75)||(30916508-30916544)
chr7 (35-75)||(42343296-42343336)
[»] chr5 (2 HSPs)
chr5 (18-75)||(42991340-42991398)
chr5 (35-78)||(7495265-7495308)
[»] chr6 (4 HSPs)
chr6 (35-76)||(34716164-34716205)
chr6 (35-75)||(10607352-10607392)
chr6 (34-75)||(20687464-20687505)
chr6 (35-75)||(20689064-20689104)
[»] chr3 (2 HSPs)
chr3 (35-75)||(44406197-44406237)
chr3 (35-72)||(35431335-35431372)
[»] chr4 (3 HSPs)
chr4 (34-77)||(55511900-55511943)
chr4 (33-75)||(45534028-45534070)
chr4 (31-75)||(53665090-53665134)
[»] chr2 (1 HSPs)
chr2 (34-75)||(6852816-6852857)
[»] chr8 (1 HSPs)
chr8 (35-75)||(42639168-42639208)
[»] chr1 (3 HSPs)
chr1 (35-75)||(38618230-38618270)
chr1 (35-75)||(50355004-50355044)
chr1 (35-75)||(51610229-51610269)


Alignment Details
Target: chr7 (Bit Score: 153; Significance: 3e-81; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 18 - 201
Target Start/End: Complemental strand, 37730777 - 37730593
Alignment:
Q  18 taaaaatggtacctttt-atggtgggaaagtattctccctacccaccctaaatgccaccaaaatttaccattctccctcttcacagatctatcatcaatt 116  Q
    |||||||||||| |||| |||||||||||||||||||||||||||||||  |||||||| ||||||||| ||||||||||||| ||||||||||||||||    
T  37730777 taaaaatggtacttttttatggtgggaaagtattctccctacccaccctcgatgccaccgaaatttacccttctccctcttcatagatctatcatcaatt 37730678  T
Q  117 cccttctccctcttcacaaaactttcatagattcccaaatacacgatatgaaaaaactaaatctaaaaatccatcaatcacaacg 201  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37730677 cccttctccctcttcacaaaactttcatagattcccaaatacacgatatgaaaaaactaaatctaaaaatccatcaatcacaacg 37730593  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 34 - 75
Target Start/End: Original strand, 34853341 - 34853382
Alignment:
Q  34 tatggtgggaaagtattctccctacccaccctaaatgccacc 75  Q
    |||||||||||||| |||  ||||||||||||||||||||||    
T  34853341 tatggtgggaaagtcttcctcctacccaccctaaatgccacc 34853382  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 34 - 75
Target Start/End: Original strand, 42344221 - 42344262
Alignment:
Q  34 tatggtgggaaagtattctccctacccaccctaaatgccacc 75  Q
    ||||||||||||| ||||  ||||||||||||||||||||||    
T  42344221 tatggtgggaaagaattcctcctacccaccctaaatgccacc 42344262  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 75
Target Start/End: Original strand, 30916508 - 30916544
Alignment:
Q  39 tgggaaagtattctccctacccaccctaaatgccacc 75  Q
    |||||||| ||||| ||||||||||||||||||||||    
T  30916508 tgggaaagaattcttcctacccaccctaaatgccacc 30916544  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 75
Target Start/End: Complemental strand, 42343336 - 42343296
Alignment:
Q  35 atggtgggaaagtattctccctacccaccctaaatgccacc 75  Q
    ||||| |||||||||||  ||||||||||||||||||||||    
T  42343336 atggtaggaaagtattcctcctacccaccctaaatgccacc 42343296  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 42991398 - 42991340
Alignment:
Q  18 taaaaatggtacctttt-atggtgggaaagtattctccctacccaccctaaatgccacc 75  Q
    |||||||||||| |||| ||||| | |||||||||||||||||||||||||||||||||    
T  42991398 taaaaatggtactttttcatggtagaaaagtattctccctacccaccctaaatgccacc 42991340  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 35 - 78
Target Start/End: Original strand, 7495265 - 7495308
Alignment:
Q  35 atggtgggaaagtattctccctacccaccctaaatgccaccaaa 78  Q
    |||||||||||| |||| |||||||||||||||||| |||||||    
T  7495265 atggtgggaaagaattccccctacccaccctaaatgtcaccaaa 7495308  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 35 - 76
Target Start/End: Complemental strand, 34716205 - 34716164
Alignment:
Q  35 atggtgggaaagtattctccctacccaccctaaatgccacca 76  Q
    ||||||||||||||||| | ||||||||||||||||||||||    
T  34716205 atggtgggaaagtattccctctacccaccctaaatgccacca 34716164  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 75
Target Start/End: Original strand, 10607352 - 10607392
Alignment:
Q  35 atggtgggaaagtattctccctacccaccctaaatgccacc 75  Q
    ||||||||||||||||| | |||||||||||||||||||||    
T  10607352 atggtgggaaagtattccctctacccaccctaaatgccacc 10607392  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 34 - 75
Target Start/End: Complemental strand, 20687505 - 20687464
Alignment:
Q  34 tatggtgggaaagtattctccctacccaccctaaatgccacc 75  Q
    ||||||||||||||||||  |||||| |||||||||||||||    
T  20687505 tatggtgggaaagtattcctcctacctaccctaaatgccacc 20687464  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 75
Target Start/End: Original strand, 20689064 - 20689104
Alignment:
Q  35 atggtgggaaagtattctccctacccaccctaaatgccacc 75  Q
    ||||| |||||||||||  ||||||||||||||||||||||    
T  20689064 atggtaggaaagtattcctcctacccaccctaaatgccacc 20689104  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 75
Target Start/End: Complemental strand, 44406237 - 44406197
Alignment:
Q  35 atggtgggaaagtattctccctacccaccctaaatgccacc 75  Q
    |||||||||||| ||||| ||||||||||||||||||||||    
T  44406237 atggtgggaaagaattcttcctacccaccctaaatgccacc 44406197  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 35 - 72
Target Start/End: Complemental strand, 35431372 - 35431335
Alignment:
Q  35 atggtgggaaagtattctccctacccaccctaaatgcc 72  Q
    |||||||||||||||||  |||||||||||||||||||    
T  35431372 atggtgggaaagtattcctcctacccaccctaaatgcc 35431335  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 34 - 77
Target Start/End: Complemental strand, 55511943 - 55511900
Alignment:
Q  34 tatggtgggaaagtattctccctacccaccctaaatgccaccaa 77  Q
    ||||||||||||||||||  |||||| |||||||||||||||||    
T  55511943 tatggtgggaaagtattcctcctacctaccctaaatgccaccaa 55511900  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 75
Target Start/End: Complemental strand, 45534070 - 45534028
Alignment:
Q  33 ttatggtgggaaagtattctccctacccaccctaaatgccacc 75  Q
    ||||||||||||| | ||| |||||||||||||||||||||||    
T  45534070 ttatggtgggaaaatcttccccctacccaccctaaatgccacc 45534028  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 75
Target Start/End: Original strand, 53665090 - 53665134
Alignment:
Q  31 ttttatggtgggaaagtattctccctacccaccctaaatgccacc 75  Q
    |||||||||||||||| ||||   |||||||||||||||||||||    
T  53665090 ttttatggtgggaaagaattccttctacccaccctaaatgccacc 53665134  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 34 - 75
Target Start/End: Original strand, 6852816 - 6852857
Alignment:
Q  34 tatggtgggaaagtattctccctacccaccctaaatgccacc 75  Q
    ||||||||||||| ||||  ||||||||||||||||||||||    
T  6852816 tatggtgggaaagaattcctcctacccaccctaaatgccacc 6852857  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 75
Target Start/End: Original strand, 42639168 - 42639208
Alignment:
Q  35 atggtgggaaagtattctccctacccaccctaaatgccacc 75  Q
    ||||||| ||||||||| | |||||||||||||||||||||    
T  42639168 atggtggaaaagtattccctctacccaccctaaatgccacc 42639208  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 75
Target Start/End: Complemental strand, 38618270 - 38618230
Alignment:
Q  35 atggtgggaaagtattctccctacccaccctaaatgccacc 75  Q
    |||||||||||| ||||  ||||||||||||||||||||||    
T  38618270 atggtgggaaagaattcctcctacccaccctaaatgccacc 38618230  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 75
Target Start/End: Original strand, 50355004 - 50355044
Alignment:
Q  35 atggtgggaaagtattctccctacccaccctaaatgccacc 75  Q
    |||||||||||| ||||  ||||||||||||||||||||||    
T  50355004 atggtgggaaagaattcctcctacccaccctaaatgccacc 50355044  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 75
Target Start/End: Original strand, 51610229 - 51610269
Alignment:
Q  35 atggtgggaaagtattctccctacccaccctaaatgccacc 75  Q
    ||||||||||| |||||  ||||||||||||||||||||||    
T  51610229 atggtgggaaaatattcctcctacccaccctaaatgccacc 51610269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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