View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11142_low_71 (Length: 237)
Name: NF11142_low_71
Description: NF11142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11142_low_71 |
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| [»] scaffold0734 (2 HSPs) |
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Alignment Details
Target: scaffold0734 (Bit Score: 83; Significance: 2e-39; HSPs: 2)
Name: scaffold0734
Description:
Target: scaffold0734; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 136 - 226
Target Start/End: Complemental strand, 1447 - 1357
Alignment:
| Q |
136 |
gatgttgagtttgatatccttcttttctgcacataaattaaacaccagagttgaatgagggtccaatgtaatcaagtatcctcctttgctt |
226 |
Q |
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| T |
1447 |
gatgttgagtttgatatccttcttttctgcacacaaattaaacaccagagttgaatgaggttccaatgtaatcaagtatcctcctttgctt |
1357 |
T |
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Target: scaffold0734; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 24 - 70
Target Start/End: Complemental strand, 1559 - 1513
Alignment:
| Q |
24 |
aatgggcagctgtagtatcaatatttaagcaacataaacattgtctc |
70 |
Q |
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| T |
1559 |
aatgggcagctgtagtatcaatatttaagcaacataaacattgtctc |
1513 |
T |
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