View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11142_low_72 (Length: 237)
Name: NF11142_low_72
Description: NF11142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11142_low_72 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 150; Significance: 2e-79; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 9579519 - 9579733
Alignment:
| Q |
1 |
aaaaatccctccctttctcgccttccaaatgctccacatactcgcgaaccaaatggcttcaagtccctgaaaggcatctttcgtcacgcgaaccagccct |
100 |
Q |
| |
|
|||||||| | | ||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| ||||||||||||||| |||||||||| |
|
|
| T |
9579519 |
aaaaatcctttcatttctcgccttccaaatgctccacatactcgtgaaccaaatggcttcaagttcctgaactgcatctttcgtcacg--aaccagccct |
9579616 |
T |
|
| Q |
101 |
gtaaaggtaataaagttgatggtacacatattgtgaaacagtaccacctgtactcccagccaatgcgcaattccgaaccatacttttttgatacagtcgg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
9579617 |
gtaaaggtaataaagttgatggtacacat--tgtgaaaca---ccacttgtactcccagccaatgcgcaattccgaaccatacttttttgatacagttgg |
9579711 |
T |
|
| Q |
201 |
gcaagcaaaacataagctgtta |
222 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
9579712 |
gcaagcaaaacataagctgtta |
9579733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 32718753 - 32718543
Alignment:
| Q |
1 |
aaaaatccctccctttctcgccttccaaatgctccacatactcgcgaaccaaatggcttcaagtccctgaaaggcatctttcgtcacgcgaaccagccct |
100 |
Q |
| |
|
|||||||| | | |||||||||||| ||||| ||||||||||||||||||| |||||||| |||||||||| |||||||| || | | ||||||||||| |
|
|
| T |
32718753 |
aaaaatccttgcatttctcgccttcgaaatgttccacatactcgcgaaccagatggcttccagtccctgaactgcatcttttgttatgggaaccagccct |
32718654 |
T |
|
| Q |
101 |
gtaaaggtaataaagttgatggtacacatattgtgaaacagtaccacctgtactcccagccaatgcgcaattccgaaccatacttttttgatacagtcgg |
200 |
Q |
| |
|
||||| |||||||||| |||||||| ||||||||||||| ||||||||||| || ||||| |||||||||| |||||| || |||||| |||||||| |
|
|
| T |
32718653 |
gtaaatgtaataaagtggatggtactcatattgtgaaac---accacctgtacaccaagccattgcgcaattctgaaccagac--ttttgagacagtcgg |
32718559 |
T |
|
| Q |
201 |
gcaagcaaaacataag |
216 |
Q |
| |
|
|||||||||| ||||| |
|
|
| T |
32718558 |
gcaagcaaaaaataag |
32718543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 118 - 216
Target Start/End: Original strand, 9585159 - 9585252
Alignment:
| Q |
118 |
gatggtacacatattgtgaaacagtaccacctgtactcccagccaatgcgcaattccgaaccatacttttttgatacagtcgggcaagcaaaacataag |
216 |
Q |
| |
|
||||||||||||| ||||||| ||||| ||||||||||||||||||| |||||||||||||||||||| | |||||||||||| |||||| ||||| |
|
|
| T |
9585159 |
gatggtacacataatgtgaaa---taccatctgtactcccagccaatgcacaattccgaaccatacttttct--tacagtcgggcatgcaaaaaataag |
9585252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 14 - 60
Target Start/End: Original strand, 9585070 - 9585116
Alignment:
| Q |
14 |
tttctcgccttccaaatgctccacatactcgcgaaccaaatggcttc |
60 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
9585070 |
tttctcgccttcaaaatgctccacatactcgcgaaccaaatggcttc |
9585116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University