View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11142_low_79 (Length: 202)
Name: NF11142_low_79
Description: NF11142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11142_low_79 |
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| [»] chr8 (2 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 20215522 - 20215321
Alignment:
| Q |
1 |
aacctattctgccaccaagtttaattaagaaaagcatatcttgtgcaaactccagtcctttcaacagcgccgtaaaacctgaagtgaccacaacatccct |
100 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20215522 |
aacctattctgccaccaagtttaattaagaacagcatatcttgtgcaaactccagtcctttcaacagcgccgtaaaacctgaagtgaccacaacatccct |
20215423 |
T |
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| Q |
101 |
tatgcatcttgcaccagctgcatcgatattcagtttgtaggatccgataagacataaggcgacatcttatgtttgaaactagcataggtaaaggctgtgt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20215422 |
tatgcatcttgcaccagctgcatcgatattcagtttgtaggatccgataagacataaggcgacatcttatgtttgaaactagcataggtaaaggctgtgt |
20215323 |
T |
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| Q |
201 |
tt |
202 |
Q |
| |
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|| |
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| T |
20215322 |
tt |
20215321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 20235120 - 20234919
Alignment:
| Q |
1 |
aacctattctgccaccaagtttaattaagaaaagcatatcttgtgcaaactccagtcctttcaacagcgccgtaaaacctgaagtgaccacaacatccct |
100 |
Q |
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|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20235120 |
aacctattctgccaccaagtttaattaagaacagcatatcttgtgcaaactccagtcctttcaacagcgccgtaaaacctgaagtgaccacaacatccct |
20235021 |
T |
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| Q |
101 |
tatgcatcttgcaccagctgcatcgatattcagtttgtaggatccgataagacataaggcgacatcttatgtttgaaactagcataggtaaaggctgtgt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20235020 |
tatgcatcttgcaccagctgcatcgatattcagtttgtaggatccgataagacataaggcgacatcttatgtttgaaactagcataggtaaaggctgtgt |
20234921 |
T |
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| Q |
201 |
tt |
202 |
Q |
| |
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|| |
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| T |
20234920 |
tt |
20234919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 44300034 - 44299833
Alignment:
| Q |
1 |
aacctattctgccaccaagtttaattaagaaaagcatatcttgtgcaaactccagtcctttcaacagcgccgtaaaacctgaagtgaccacaacatccct |
100 |
Q |
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|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44300034 |
aacctattctgccaccaagtttaattaagaacagcatatcttgtgcaaactccagtcctttcaacagcgccgtaaaacctgaagtgaccacaacatccct |
44299935 |
T |
|
| Q |
101 |
tatgcatcttgcaccagctgcatcgatattcagtttgtaggatccgataagacataaggcgacatcttatgtttgaaactagcataggtaaaggctgtgt |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44299934 |
tatgcatcttgcaccagctgcatcgatattcagtttgtaggatccgataagacataaggcgacatcttatgtttgaaactagcataggtaaaggctgtgt |
44299835 |
T |
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| Q |
201 |
tt |
202 |
Q |
| |
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|| |
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|
| T |
44299834 |
tt |
44299833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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