View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11142_low_9 (Length: 519)
Name: NF11142_low_9
Description: NF11142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11142_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 403; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 71 - 505
Target Start/End: Complemental strand, 30277256 - 30276822
Alignment:
| Q |
71 |
atatatccaagcactccttgagtgatgaaaatatacctttagaggtaggtttatgagcttagatatgaaaatttgtttctagatttaaaccatatttcaa |
170 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || |||||||||||||||||| |
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| T |
30277256 |
atatatccaagcactccttgagtgatgaaaatatacctttagaggtaggtttatgagcttagatatgaaaatgtgttgttaaatttaaaccatatttcaa |
30277157 |
T |
|
| Q |
171 |
attgcatttactactatttttctttcaaacataccattgattgatactggtactaatttgtgttgaaacatagtcataatttgacacatctatacacaaa |
270 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
30277156 |
attgcatttactactatttttctttcaaacatacccttgattgatactagtactaatttgtgttgaaagatagtcataatttgacacatctatacacaaa |
30277057 |
T |
|
| Q |
271 |
aaagacaatttagtaatattcatacattacatacacattaattaaactacaaacttttcttaatactccatatgtgaaaagtatcaaaggggcttataaa |
370 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30277056 |
aaagacaatttagtaatattcatacattacatacacattaattaaactacaaacttttcttaatactccatatgtgaaaagtatcaaaggggcttataaa |
30276957 |
T |
|
| Q |
371 |
aagtgaaggactagtattgttcattcatgtttatgaaggatattcctgcatgttacatacctagctcttgcgtaggttgcaaaatcagatttctaatctt |
470 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30276956 |
aagagaaggactagtattgttcattcatgtttatgaaggatattcctgcatgttacatacctagctcttgcgtaggttgcaaaatcagatttctaatctt |
30276857 |
T |
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| Q |
471 |
tattctttttattgttgaatggcatataatgttga |
505 |
Q |
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| T |
30276856 |
tattctttttattgttgaatggcatataatgttga |
30276822 |
T |
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Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 303 - 335
Target Start/End: Original strand, 30511728 - 30511760
Alignment:
| Q |
303 |
acacattaattaaactacaaacttttcttaata |
335 |
Q |
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| T |
30511728 |
acacattaaataaactacaaacttttcttaata |
30511760 |
T |
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