View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11143_high_3 (Length: 354)
Name: NF11143_high_3
Description: NF11143
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11143_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 17 - 335
Target Start/End: Complemental strand, 40525031 - 40524712
Alignment:
| Q |
17 |
cagagatactctatctctaattgttccaagtcatgtgattgccattcaggtatactagcaattctttctgtgctgataaatctaccacttcccattgatt |
116 |
Q |
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| T |
40525031 |
cagagatactctatctctaattgttccaagtcatgtgattgccattcaggtatactagcaattctttctgtgctgataaatctaccacttcccattgatt |
40524932 |
T |
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| Q |
117 |
gtgctttaaggaaggaaggccataagtgtattcaccaattttaggcgaaaactgtgatcacatcctgaatactgttttgtttgctgctttac-nnnnnnn |
215 |
Q |
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| T |
40524931 |
gtgctttaaggaaggaaggccataagtgtattcaccaattttaggcgaaaactgtgatcacatcctgaatactgttttgtttgctgctttactttttttt |
40524832 |
T |
|
| Q |
216 |
nnnctttccttccatgtatatgctgaagagagtgcatccatatggacatgtatatgtgattcaaatggatttcctaaagtggcagcaggaagccataatc |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40524831 |
tttctttccttccatgtatatgctgaagagagtgcatccatatggacatgtatatgtgattcaaatggatttcctaaagtggcagcaggaagccataatc |
40524732 |
T |
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| Q |
316 |
ctaattgctttattgcctgc |
335 |
Q |
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| T |
40524731 |
ctaattgctttattgcctgc |
40524712 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 240 - 303
Target Start/End: Original strand, 21600010 - 21600073
Alignment:
| Q |
240 |
gaagagagtgcatccatatggacatgtatatgtgattcaaatggatttcctaaagtggcagcag |
303 |
Q |
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|||||| ||||||| |||||||||||||| |||||| | ||||||||||| |||||||||||| |
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| T |
21600010 |
gaagagggtgcatctatatggacatgtatttgtgatcccaatggatttcccgaagtggcagcag |
21600073 |
T |
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