View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11143_high_5 (Length: 340)

Name: NF11143_high_5
Description: NF11143
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11143_high_5
NF11143_high_5
[»] chr4 (10 HSPs)
chr4 (16-114)||(24421448-24421546)
chr4 (16-114)||(24470177-24470275)
chr4 (16-111)||(24477732-24477827)
chr4 (16-71)||(24482208-24482263)
chr4 (16-61)||(24406613-24406658)
chr4 (18-70)||(24421423-24421475)
chr4 (18-70)||(24470248-24470300)
chr4 (216-244)||(24421318-24421346)
chr4 (216-244)||(24470377-24470405)
chr4 (216-244)||(24470569-24470597)
[»] chr1 (1 HSPs)
chr1 (16-67)||(11905425-11905476)
[»] scaffold0879 (1 HSPs)
scaffold0879 (216-244)||(4428-4456)


Alignment Details
Target: chr4 (Bit Score: 75; Significance: 2e-34; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 16 - 114
Target Start/End: Complemental strand, 24421546 - 24421448
Alignment:
Q  16 catattactacaaatccccacctccaccatcttcatcaccaccacctccctatgtccacaaatacccaccttattattataaatctccacctccaccat 114  Q
    |||||||||||||||||||||||||||| ||| |||| ||||||||||| |||||||||||||||||||||||||| || |||||||||||||||||||    
T  24421546 catattactacaaatccccacctccaccttctccatcgccaccacctccatatgtccacaaatacccaccttattactacaaatctccacctccaccat 24421448  T

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Target: chr4; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 16 - 114
Target Start/End: Original strand, 24470177 - 24470275
Alignment:
Q  16 catattactacaaatccccacctccaccatcttcatcaccaccacctccctatgtccacaaatacccaccttattattataaatctccacctccaccat 114  Q
    |||||||||||||||||||||||||||| ||| |||| ||||||||||| |||||||||||||||||||||||||| || |||||||||||||||||||    
T  24470177 catattactacaaatccccacctccaccttctccatcgccaccacctccatatgtccacaaatacccaccttattactacaaatctccacctccaccat 24470275  T

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Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 16 - 111
Target Start/End: Complemental strand, 24477827 - 24477732
Alignment:
Q  16 catattactacaaatccccacctccaccatcttcatcaccaccacctccctatgtccacaaatacccaccttattattataaatctccacctccac 111  Q
    ||||||||||||| | ||||||||| ||||||  |||||| |||||||||||||||  |||||||||||||||||| || | || |||||||||||    
T  24477827 catattactacaagttcccacctccgccatctctatcacctccacctccctatgtctgcaaatacccaccttattactacatatatccacctccac 24477732  T

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Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 16 - 71
Target Start/End: Complemental strand, 24482263 - 24482208
Alignment:
Q  16 catattactacaaatccccacctccaccatcttcatcaccaccacctccctatgtc 71  Q
    |||||||||||||||| ||||| ||||||||| |||||||||||||||| ||||||    
T  24482263 catattactacaaatctccaccaccaccatctccatcaccaccacctccttatgtc 24482208  T

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Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 16 - 61
Target Start/End: Complemental strand, 24406658 - 24406613
Alignment:
Q  16 catattactacaaatccccacctccaccatcttcatcaccaccacc 61  Q
    |||||||||||||  ||||||||||||||||| |||||||||||||    
T  24406658 catattactacaagaccccacctccaccatctccatcaccaccacc 24406613  T

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Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 70
Target Start/End: Complemental strand, 24421475 - 24421423
Alignment:
Q  18 tattactacaaatccccacctccaccatcttcatcaccaccacctccctatgt 70  Q
    |||||||||||||| ||||||||||||||| | |||||||| ||||| |||||    
T  24421475 tattactacaaatctccacctccaccatctccctcaccacctcctccgtatgt 24421423  T

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Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 70
Target Start/End: Original strand, 24470248 - 24470300
Alignment:
Q  18 tattactacaaatccccacctccaccatcttcatcaccaccacctccctatgt 70  Q
    |||||||||||||| ||||||||||||||| | |||||||| ||||| |||||    
T  24470248 tattactacaaatctccacctccaccatctccctcaccacctcctccgtatgt 24470300  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 216 - 244
Target Start/End: Complemental strand, 24421346 - 24421318
Alignment:
Q  216 tcacctcccccaccatatgtctataagag 244  Q
    |||||||||||||||||||||||||||||    
T  24421346 tcacctcccccaccatatgtctataagag 24421318  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 216 - 244
Target Start/End: Original strand, 24470377 - 24470405
Alignment:
Q  216 tcacctcccccaccatatgtctataagag 244  Q
    |||||||||||||||||||||||||||||    
T  24470377 tcacctcccccaccatatgtctataagag 24470405  T

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Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 216 - 244
Target Start/End: Original strand, 24470569 - 24470597
Alignment:
Q  216 tcacctcccccaccatatgtctataagag 244  Q
    |||||||||||||||||||||||||||||    
T  24470569 tcacctcccccaccatatgtctataagag 24470597  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 16 - 67
Target Start/End: Original strand, 11905425 - 11905476
Alignment:
Q  16 catattactacaaatccccacctccaccatcttcatcaccaccacctcccta 67  Q
    |||||||||||||||| ||||| ||||||||  |||||||||| ||||||||    
T  11905425 catattactacaaatctccaccaccaccatcaccatcaccaccccctcccta 11905476  T

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Target: scaffold0879 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0879
Description:

Target: scaffold0879; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 216 - 244
Target Start/End: Original strand, 4428 - 4456
Alignment:
Q  216 tcacctcccccaccatatgtctataagag 244  Q
    |||||||||||||||||||||||||||||    
T  4428 tcacctcccccaccatatgtctataagag 4456  T

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