View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11143_high_6 (Length: 315)
Name: NF11143_high_6
Description: NF11143
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11143_high_6 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 101; Significance: 5e-50; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 28 - 144
Target Start/End: Complemental strand, 37603294 - 37603178
Alignment:
| Q |
28 |
tgtaagtttgatatcaatttcagtaattgttgtggaatgtgagatgtatccatgttcccatttaattttcataagaacatagtatgcatatgatcaaatt |
127 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37603294 |
tgtaagtttgatatcaatttcagtaattcttgtggactgtgagatgtatccatgttcccgtttaattttcataagaacatagtatgcatatgatcaaatt |
37603195 |
T |
|
| Q |
128 |
ggatttgattcattatt |
144 |
Q |
| |
|
|| |||||||||||||| |
|
|
| T |
37603194 |
gggtttgattcattatt |
37603178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 141 - 299
Target Start/End: Complemental strand, 37603112 - 37602954
Alignment:
| Q |
141 |
tattaaagccatgtgtggcatcatattttatttgagannnnnnnncaaaagatggaaatgcaagttgatccatattatgcatgtaatcccttagttttat |
240 |
Q |
| |
|
|||| ||||||||||||||||||||||| ||||||| ||| |||||||||| ||||||||||||||||||| ||||||| ||||| |||||| |
|
|
| T |
37603112 |
tattcaagccatgtgtggcatcatatttcatttgaggttttttttcaagagatggaaatacaagttgatccatattatgtatgtaattccttaattttat |
37603013 |
T |
|
| Q |
241 |
tgaaaccaagtatgaagctggaaattcgaatatataaatgctaaaatacaatttctttt |
299 |
Q |
| |
|
||||| |||||||||||| | |||||| |||||||||||||||||||||||||| |||| |
|
|
| T |
37603012 |
tgaaaacaagtatgaagcagcaaattcaaatatataaatgctaaaatacaatttatttt |
37602954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 101; Significance: 5e-50; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 28 - 144
Target Start/End: Original strand, 46557699 - 46557815
Alignment:
| Q |
28 |
tgtaagtttgatatcaatttcagtaattgttgtggaatgtgagatgtatccatgttcccatttaattttcataagaacatagtatgcatatgatcaaatt |
127 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46557699 |
tgtaagtttgatatcaatttcagtaattcttgtggactgtgagatgtatccatgttcccgtttaattttcataagaacatagtatgcatatgatcaaatt |
46557798 |
T |
|
| Q |
128 |
ggatttgattcattatt |
144 |
Q |
| |
|
|| |||||||||||||| |
|
|
| T |
46557799 |
gggtttgattcattatt |
46557815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 141 - 299
Target Start/End: Original strand, 46557881 - 46558039
Alignment:
| Q |
141 |
tattaaagccatgtgtggcatcatattttatttgagannnnnnnncaaaagatggaaatgcaagttgatccatattatgcatgtaatcccttagttttat |
240 |
Q |
| |
|
|||| ||||||||||||||||||||||| ||||||| ||| |||||||||| ||||||||||||||||||| ||||||| ||||| |||||| |
|
|
| T |
46557881 |
tattcaagccatgtgtggcatcatatttcatttgaggttttttttcaagagatggaaatacaagttgatccatattatgtatgtaattccttaattttat |
46557980 |
T |
|
| Q |
241 |
tgaaaccaagtatgaagctggaaattcgaatatataaatgctaaaatacaatttctttt |
299 |
Q |
| |
|
||||| |||||||||||| | |||||| |||||||||||||||||||||||||| |||| |
|
|
| T |
46557981 |
tgaaaacaagtatgaagcagcaaattcaaatatataaatgctaaaatacaatttatttt |
46558039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University