View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11143_low_1 (Length: 464)
Name: NF11143_low_1
Description: NF11143
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11143_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 384; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 11 - 443
Target Start/End: Original strand, 1251817 - 1252269
Alignment:
| Q |
11 |
atggacatcagctaccatactgcattatgcatttttcgttagcaaataaaatgaagaaacttgaaggaaaaacaagataaaactacataaagatcagaat |
110 |
Q |
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| T |
1251817 |
atggacatcagctaccatactgcattatgcatttttcgttagcaaataaaatgaagaaacttgaaggaaaaacaagataaaactacataaagatcagaat |
1251916 |
T |
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| Q |
111 |
catatacctgccaatatacctaagagactttggtgctgaaccttcttgtggaaacttgcaattttctacgtatctacgaaacaaa--------------- |
195 |
Q |
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| T |
1251917 |
catatacctgccaatatacctaagagactttggtgctgaaccttcttgtggaaacttgcaattttctacgtatctacgaaacaaagttccaaggattcat |
1252016 |
T |
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| Q |
196 |
-----aattagctcaattgttacatgttaactcaagaatcaggtctcaaatagtactcgataacagaatttccaaagcttacttggcggttggttcatcc |
290 |
Q |
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| T |
1252017 |
ttgaaaattagctcaattgttacatgttaactcaagaatcaggtctgaaatagtactcgataacagaatttccaaagcttacttggcggttggttcatcc |
1252116 |
T |
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| Q |
291 |
cagtttttagcatttccctcattcacagaataaatctttcctttctttggtatctatggaagtaacacgaacgttacagcaaataaagttcagaattgcc |
390 |
Q |
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| T |
1252117 |
cagtttttagcatttccctcattcacagaataaatctttcctttctttggtatctatggaagtaacacgaacgttacagcaaataaagttcagaattgcc |
1252216 |
T |
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| Q |
391 |
ttagtaaaaacctaataaactttattttaattcatttaccaatttagctgcaa |
443 |
Q |
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| T |
1252217 |
ttagtaaaaacctaataaactttattttaattcatttaccaatttagctgcaa |
1252269 |
T |
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