View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11143_low_10 (Length: 210)
Name: NF11143_low_10
Description: NF11143
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11143_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 105; Significance: 1e-52; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 17 - 125
Target Start/End: Complemental strand, 37811869 - 37811761
Alignment:
| Q |
17 |
aaggtaggtctaaatcgaaacgcgatgaagagatggagtattcagtggaaactcgatactccttgcataagaggaaagatagagaacatagcgaggatag |
116 |
Q |
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| T |
37811869 |
aaggtaggtctaaatcgaagcgcgatgaagagatggagtattcagtggaaactcgatactccttgcataagaggaaagatagagaacatagcgaggatag |
37811770 |
T |
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| Q |
117 |
ggaattgga |
125 |
Q |
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| T |
37811769 |
ggaattgga |
37811761 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 124 - 191
Target Start/End: Complemental strand, 37811738 - 37811671
Alignment:
| Q |
124 |
gaagcaaagaaggaacgtaggagatttggtgataaacttggaagcctctctagtagtgatgccttagc |
191 |
Q |
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| T |
37811738 |
gaagcaaagaaggaacgtaggagatttggtgataaacttggaagcctctctagtagtgatgccttagc |
37811671 |
T |
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Target: chr1 (Bit Score: 63; Significance: 1e-27; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 13 - 125
Target Start/End: Complemental strand, 52357275 - 52357166
Alignment:
| Q |
13 |
agcaaaggtaggtctaaatcgaaacgcgatgaagagatggagtattcagtggaaactcgatactccttgcataagaggaaagatagagaacatagcgagg |
112 |
Q |
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| T |
52357275 |
agcaaaggtaggtctaaatcgaagcgcgatgaagagagggaagattcattggag---cgatactcctcgcataagaggaaagacagagaacatagcgagg |
52357179 |
T |
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| Q |
113 |
atagggaattgga |
125 |
Q |
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| T |
52357178 |
atcgggaattgga |
52357166 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 157 - 191
Target Start/End: Complemental strand, 52356283 - 52356249
Alignment:
| Q |
157 |
aaacttggaagcctctctagtagtgatgccttagc |
191 |
Q |
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| T |
52356283 |
aaacttggaagcctctctagtagtgatgccttagc |
52356249 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 55; Significance: 8e-23; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 15 - 125
Target Start/End: Complemental strand, 17209546 - 17209436
Alignment:
| Q |
15 |
caaaggtaggtctaaatcgaaacgcgatgaagagatggagtattcagtggaaactcgatactccttgcataagaggaaagatagagaacatagcgaggat |
114 |
Q |
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||||||||||| || |||||| | | | |||||||||||| |||||||| || | | |||||||| ||||||||||||||||||||||||||||||||| |
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| T |
17209546 |
caaaggtaggtatatatcgaagcactacgaagagatggaggattcagtgaaaccgcaatactcctcgcataagaggaaagatagagaacatagcgaggac |
17209447 |
T |
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| Q |
115 |
agggaattgga |
125 |
Q |
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|||||||||| |
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| T |
17209446 |
cgggaattgga |
17209436 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 191
Target Start/End: Complemental strand, 17209179 - 17209145
Alignment:
| Q |
157 |
aaacttggaagcctctctagtagtgatgccttagc |
191 |
Q |
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|||||||||||| |||||||||||||||||||||| |
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| T |
17209179 |
aaacttggaagcttctctagtagtgatgccttagc |
17209145 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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