View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11143_low_8 (Length: 264)
Name: NF11143_low_8
Description: NF11143
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11143_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 107; Significance: 1e-53; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 2747154 - 2747036
Alignment:
| Q |
1 |
cttggaacaatagaagtcaca-ttatgtcattgtccaacaatcaaaattaagatttatgtttattgtttcaggttggcacacatacttttgggttgcttt |
99 |
Q |
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| T |
2747154 |
cttggaacaatagaagtcacaattatgtcattgtccaacaatcaaaattaagatttatgtttattgtttcaggttggcacacatacttttgggttgcttt |
2747055 |
T |
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| Q |
100 |
cattcccgtcattgtaagt |
118 |
Q |
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|||||| |||||||||||| |
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| T |
2747054 |
cattcctgtcattgtaagt |
2747036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 168 - 249
Target Start/End: Complemental strand, 2747017 - 2746934
Alignment:
| Q |
168 |
tgctttaaatagaataggtcatagatctttatcgaacgacctgaactagtctaa--tatgtgcatgcatataaatgtaaatttt |
249 |
Q |
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|||||||||||||||||||||||||||||| |||||| |||||||||| | ||| |||||||||||||||||||||||||||| |
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| T |
2747017 |
tgctttaaatagaataggtcatagatctttgtcgaaccacctgaactattataatctatgtgcatgcatataaatgtaaatttt |
2746934 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 5 - 118
Target Start/End: Complemental strand, 2754946 - 2754835
Alignment:
| Q |
5 |
gaacaatagaagtcac-attatgtcattgtccaacaatcaaaattaagatttatgtttattgtttcaggttggcacacatacttttgggttgctttcatt |
103 |
Q |
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| T |
2754946 |
gaacaatagaagtcacaattatgcaattttc---caatcaaaattaagatttctgttcatggtttcaggttggcacacatatttttggattgctttcatt |
2754850 |
T |
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| Q |
104 |
cccgtcattgtaagt |
118 |
Q |
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| T |
2754849 |
cctgtcattgtaagt |
2754835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 45 - 118
Target Start/End: Complemental strand, 27383629 - 27383556
Alignment:
| Q |
45 |
aattaagatttatgtttattgtttcaggttggcacacatacttttgggttgctttcattcccgtcattgtaagt |
118 |
Q |
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||||||||| | ||| ||||||| ||| |||||||||||| |||||| |||||||||||| |||||||||||| |
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| T |
27383629 |
aattaagatgtttgtgtattgttccagattggcacacatatttttggtttgctttcattcatgtcattgtaagt |
27383556 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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