View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11143_low_9 (Length: 240)
Name: NF11143_low_9
Description: NF11143
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11143_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 162; Significance: 1e-86; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 2747593 - 2747836
Alignment:
| Q |
1 |
tgcttgaaaaatgatttctgaaatatatatgaaaaattacaaggcataatcaactacaata------gtcaaagacaatatggtaaaaccagaaaagtat |
94 |
Q |
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| T |
2747593 |
tgcttgaaaaatgatttctgaaatataaatgaaaaattacaaggcataatcaactacaatattaatagtcaaagacaatatggtaaaaccagaaaagtat |
2747692 |
T |
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| Q |
95 |
a--------------atcaacctaccacccatcccattatagcataatttttgccaaaaccagtaaaacgattctttataaaagcatgctgatgaacatg |
180 |
Q |
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| T |
2747693 |
aatcaactacatataatcaacctaccacccatcccattatagcataatttttgccaaaaccagtaaaacgattctttataaaagaatgctgatgaacatg |
2747792 |
T |
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| Q |
181 |
agtcaccgtatccttccattcgggtgctgcattagaccggtatg |
224 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
2747793 |
agtcaccgtatccgtccattcgggtgctgcattagaccggtatg |
2747836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 92 - 224
Target Start/End: Original strand, 2755748 - 2755880
Alignment:
| Q |
92 |
tataatcaacctaccacccatcccattatagcataatttttgccaaaaccagtaaaacgattctttataaaagcatgctgatgaacatgagtcaccgtat |
191 |
Q |
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|||||| ||||||||| ||| |||||||| ||| ||| ||||||||||||||||||| ||| ||| |||||||| || |||||||||||||||||||||| |
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| T |
2755748 |
tataattaacctaccaaccaccccattatggcagaatctttgccaaaaccagtaaaatgatccttgataaaagcgtgttgatgaacatgagtcaccgtat |
2755847 |
T |
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| Q |
192 |
ccttccattcgggtgctgcattagaccggtatg |
224 |
Q |
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| T |
2755848 |
ccgtccgttcgggggctgcattagaccagtatg |
2755880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 92 - 217
Target Start/End: Original strand, 2372998 - 2373123
Alignment:
| Q |
92 |
tataatcaacctaccacccatcccattatagcataatttttgccaaaaccagtaaaacgattctttataaaagcatgctgatgaacatgagtcaccgtat |
191 |
Q |
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|||||| ||||||||| || |||||||||||| ||| |||||||||||||||||| ||| ||| ||||||||||| |||||||||||||||||||||| |
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| T |
2372998 |
tataattaacctaccaagcaccccattatagcagaatcattgccaaaaccagtaaaatgatccttgataaaagcatgttgatgaacatgagtcaccgtat |
2373097 |
T |
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| Q |
192 |
ccttccattcgggtgctgcattagac |
217 |
Q |
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|| ||| |||||| |||||||||||| |
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| T |
2373098 |
ccatccgttcgggggctgcattagac |
2373123 |
T |
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