View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11144_high_13 (Length: 344)
Name: NF11144_high_13
Description: NF11144
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11144_high_13 |
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| [»] scaffold0127 (1 HSPs) |
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Alignment Details
Target: scaffold0127 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: scaffold0127
Description:
Target: scaffold0127; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 18 - 322
Target Start/End: Original strand, 21957 - 22258
Alignment:
| Q |
18 |
acatcaccatatggaaacatatctataacagaatgtagcaaaataaaaatgaacaccggaccggaaatcacaacaacggacaggaaaatgacccagatgg |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |||||||||||||||| |||||||||| |
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| T |
21957 |
acatcaccatatggaaacatatctataacagaatgtagcaaaataaagatgaacactggaccggaaatcacgacaacggacaggaaaaggacccagatga |
22056 |
T |
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| Q |
118 |
gctaaagaaggtggtgcggagacatagtctcgtcgcaccaccactgcgtgaaaaggggccacataaacaacacataggggatgaagaaatgcaccagaaa |
217 |
Q |
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||| ||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| ||| |
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| T |
22057 |
gctgaagaaggtggtgcagagacatagtctcgtcgcaccaccactgtgtgaaaaggggccacataaacaacacataggggatgaagaaacacaccacaaa |
22156 |
T |
|
| Q |
218 |
tcaccttgaaaaccaccgcaactgcaatggggattacagatctacgaagagcccgctgcaacggctaagaattgggaaaaaccaagccgttagcgcaacc |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
22157 |
tcaccttgaaaaccaccgcaactgcaatggggattacagatctacgaagagc---ctgcaacggctaagaattgggaaaaaccaagccgtgagcgcaacc |
22253 |
T |
|
| Q |
318 |
accag |
322 |
Q |
| |
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||||| |
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| T |
22254 |
accag |
22258 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 18 - 322
Target Start/End: Complemental strand, 5745917 - 5745616
Alignment:
| Q |
18 |
acatcaccatatggaaacatatctataacagaatgtagcaaaataaaaatgaacaccggaccggaaatcacaacaacggacaggaaaatgacccagatgg |
117 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||| |
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| T |
5745917 |
acatcaccataaggaaacatatctataacagaatgtagcaaaataaaaatgaacaccggaccggaaatcacgacaacggacaaaaaaatgacccagatgg |
5745818 |
T |
|
| Q |
118 |
gctaaagaaggtggtgcggagacatagtctcgtcgcaccaccactgcgtgaaaaggggccacataaacaacacataggggatgaagaaatgcaccagaaa |
217 |
Q |
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||| ||||||||||||||||||||||||||||||||| ||||||| | ||||||||||||||||||||||||||||||||||||||||| |||||| ||| |
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| T |
5745817 |
gctgaagaaggtggtgcggagacatagtctcgtcgcatcaccactacatgaaaaggggccacataaacaacacataggggatgaagaaacgcaccacaaa |
5745718 |
T |
|
| Q |
218 |
tcaccttgaaaaccaccgcaactgcaatggggattacagatctacgaagagcccgctgcaacggctaagaattgggaaaaaccaagccgttagcgcaacc |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||| || ||||||||||||||||| |||||||||||||||||||||||| |
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| T |
5745717 |
tcaccttgaaaaccaccgcaactgcaatggggattacagatctatgaagagc---ctacaacggctaagaattggaaaaaaccaagccgttagcgcaacc |
5745621 |
T |
|
| Q |
318 |
accag |
322 |
Q |
| |
|
||||| |
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|
| T |
5745620 |
accag |
5745616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 95 - 162
Target Start/End: Original strand, 13033433 - 13033502
Alignment:
| Q |
95 |
ggacaggaa-aatgacccagatggg-ctaaagaaggtggtgcggagacatagtctcgtcgcaccaccact |
162 |
Q |
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| T |
13033433 |
ggacaggaacaacgacccagatggggctgaagacggtggtgcggagacttagtctcgtcgtaccaccact |
13033502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 122 - 164
Target Start/End: Original strand, 824529 - 824571
Alignment:
| Q |
122 |
aagaaggtggtgcggagacatagtctcgtcgcaccaccactgc |
164 |
Q |
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| T |
824529 |
aagaaggtggtgcggagacgaagtctcgtcgcaccaccactgc |
824571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 127 - 161
Target Start/End: Original strand, 7393210 - 7393244
Alignment:
| Q |
127 |
ggtggtgcggagacatagtctcgtcgcaccaccac |
161 |
Q |
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|||||||||||||| |||||||||||||||||||| |
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| T |
7393210 |
ggtggtgcggagacgtagtctcgtcgcaccaccac |
7393244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 122 - 164
Target Start/End: Complemental strand, 7873022 - 7872980
Alignment:
| Q |
122 |
aagaaggtggtgcggagacatagtctcgtcgcaccaccactgc |
164 |
Q |
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||||||||||||||||||| ||||||||||||||||| |||| |
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| T |
7873022 |
aagaaggtggtgcggagacgaagtctcgtcgcaccaccgctgc |
7872980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 129 - 161
Target Start/End: Complemental strand, 21872149 - 21872117
Alignment:
| Q |
129 |
tggtgcggagacatagtctcgtcgcaccaccac |
161 |
Q |
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|||||||||||| |||||||||||||||||||| |
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|
| T |
21872149 |
tggtgcggagacgtagtctcgtcgcaccaccac |
21872117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 125 - 161
Target Start/End: Original strand, 13455253 - 13455289
Alignment:
| Q |
125 |
aaggtggtgcggagacatagtctcgtcgcaccaccac |
161 |
Q |
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||||||||||||| || |||||||||||||||||||| |
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| T |
13455253 |
aaggtggtgcggacacgtagtctcgtcgcaccaccac |
13455289 |
T |
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