View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11144_high_15 (Length: 329)
Name: NF11144_high_15
Description: NF11144
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11144_high_15 |
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Alignment Details
Target: chr2 (Bit Score: 108; Significance: 3e-54; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 19 - 159
Target Start/End: Original strand, 28787022 - 28787165
Alignment:
| Q |
19 |
ttttgatccaccaaactctaccaatatgatacatgccttataacttgcctccaccaaatattatgcagcactgataaaaaaggcatg----tatgtcaag |
114 |
Q |
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| T |
28787022 |
ttttgatccaccaa-ctctaccaatatgatacatgccttataacttgcctccatcaaatattatgtagcactgataaaaaaggcatgtatatatgtcaag |
28787120 |
T |
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| Q |
115 |
attaacgaagcacgtcagtgactttcaaatacgcactaattggat |
159 |
Q |
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| T |
28787121 |
attaacgaaacacgtcagtgactttcaaatacgcactaattggat |
28787165 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 229 - 317
Target Start/End: Original strand, 28787233 - 28787321
Alignment:
| Q |
229 |
aattgtaactcaaattttttaataataaaaccaattcattgcactatannnnnnnatttgtagcttgttttaccatgccttttccatct |
317 |
Q |
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| T |
28787233 |
aattgtaactcaaaatttttaataataaaaccaattcattgcactatatatttttatttgtagcttgttttaccatgccttttccatct |
28787321 |
T |
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