View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11144_high_26 (Length: 249)
Name: NF11144_high_26
Description: NF11144
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11144_high_26 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 158; Significance: 3e-84; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 21009536 - 21009772
Alignment:
| Q |
1 |
cattcataacactcaatcttcagtctaatcccatacacaaccttaatcgaataaaaaacctcacaggcaacatcaatgaaacctgcataacaacaaacaa |
100 |
Q |
| |
|
|||||||||| |||||||||| ||||||| |||||||| ||||| ||||||||||||||||||| ||||||||||| ||||| ||||||||||||||| |
|
|
| T |
21009536 |
cattcataacgctcaatcttcggtctaataccatacacgaccttcatcgaataaaaaacctcacgagcaacatcaatcaaaccagcataacaacaaacag |
21009635 |
T |
|
| Q |
101 |
ataaaacaccgacgaatgtgacattatta-ggaaaaatgatcccctccttatttgtactctgaaacagactaagagcatcttcaacatgcacatgagaag |
199 |
Q |
| |
|
| | |||||| || ||||||||||||||| |||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21009636 |
aaacaacacc-acaaatgtgacattattaaggaacgatgatcccctccttatttgtactcagaaacagactaagagcatcttcaacatgcacatgagaag |
21009734 |
T |
|
| Q |
200 |
ccaaagcacatatcatagcattccaaataacaacattc |
237 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21009735 |
ccaaagcacatatcatagcattccaaataacaacattc |
21009772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 2 - 243
Target Start/End: Original strand, 20952731 - 20952975
Alignment:
| Q |
2 |
attcataacactcaatcttcagtctaatcccatacacaa-ccttaatcgaataaaaaacctcacaggcaacatcaatgaaacctgcata--acaacaaac |
98 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| |||| | ||||||||||| ||||||||||| ||||||||| |
|
|
| T |
20952731 |
attcataacactcaatcttcagtctaatcccatacacaaaccttcatcgaataaaaatcctcgcgagcaacatcaatcaaacctgcatataacaacaaac |
20952830 |
T |
|
| Q |
99 |
aaataaaacaccgacgaatgtgacattattaggaaaaatgatcccctccttatttgtactctgaaacagactaagagcatcttcaacatgcacatgagaa |
198 |
Q |
| |
|
||||||||||||||||||||||||| | ||||||| |||||||||||||||||| |||||| |||||||||| |||||||||||||||| ||||||| |
|
|
| T |
20952831 |
aaataaaacaccgacgaatgtgacactgttaggaacaatgatcccctccttattggtactcagaaacagactgagagcatcttcaacatttgcatgagac |
20952930 |
T |
|
| Q |
199 |
gccaaagcacatatcatagcattccaaataacaacattcatctca |
243 |
Q |
| |
|
||| || |||||||||| ||||||||| |||||||| || ||||| |
|
|
| T |
20952931 |
gccgaaccacatatcatggcattccaagtaacaacactcctctca |
20952975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 31 - 237
Target Start/End: Original strand, 12011231 - 12011437
Alignment:
| Q |
31 |
ccatacacaaccttaatcgaataaaaaacctcacaggcaacatcaatgaaacctgcataacaacaaacaaataaaacaccgacgaatgtgacattattag |
130 |
Q |
| |
|
|||| ||||||||| |||||| |||||||||| | | | |||||||| |||||||||| ||||||| || ||||||| || || ||||||||| ||||| |
|
|
| T |
12011231 |
ccatgcacaaccttcatcgaacaaaaaacctcgcggccgacatcaatcaaacctgcatgacaacaagcagataaaaccccaacaaatgtgacagcattag |
12011330 |
T |
|
| Q |
131 |
gaaaaatgatcccctccttatttgtactctgaaacagactaagagcatcttcaacatgcacatgagaagccaaagcacatatcatagcattccaaataac |
230 |
Q |
| |
|
||| || ||| |||||| || ||| || ||||| || |||||||||||||||||| |||||||||||||| |||| ||||||||||||||| |||| |
|
|
| T |
12011331 |
gaacaacaatctcctcctccttcatacactcaaacaaaccaagagcatcttcaacatgtccatgagaagccaaaccacaaatcatagcattccaagtaac |
12011430 |
T |
|
| Q |
231 |
aacattc |
237 |
Q |
| |
|
||||||| |
|
|
| T |
12011431 |
aacattc |
12011437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 31 - 237
Target Start/End: Original strand, 38183262 - 38183471
Alignment:
| Q |
31 |
ccatacacaaccttaatcgaataaaaaacctcacaggcaacatcaatgaaacctgcataacaacaaacaaataaaacaccgacgaatgtgacattattag |
130 |
Q |
| |
|
|||||||||||||| |||||| |||||||||| | | |||||||| ||| |||||| ||||| | || ||| || || |||||||||||| ||||| |
|
|
| T |
38183262 |
ccatacacaaccttcatcgaacaaaaaacctcgcgaccgacatcaatcaaatctgcatgacaactagcagatagaatcccaacgaatgtgacaccattag |
38183361 |
T |
|
| Q |
131 |
gaaaaatgatcccctccttatttgtactctgaaacagactaagagcatcttcaacatgcac---atgagaagccaaagcacatatcatagcattccaaat |
227 |
Q |
| |
|
||| || ||||||||||| || |||||| ||| | | ||||||||||||||||||| | ||||||||||||| || ||||||||||||||||| | |
|
|
| T |
38183362 |
gaacaacaatcccctccttcttcatactctcaaataaattaagagcatcttcaacatgtccatgatgagaagccaaaccaaatatcatagcattccaagt |
38183461 |
T |
|
| Q |
228 |
aacaacattc |
237 |
Q |
| |
|
| |||||||| |
|
|
| T |
38183462 |
agcaacattc |
38183471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 13 - 82
Target Start/End: Original strand, 20950245 - 20950314
Alignment:
| Q |
13 |
tcaatcttcagtctaatcccatacacaaccttaatcgaataaaaaacctcacaggcaacatcaatgaaac |
82 |
Q |
| |
|
||||||||| || |||||||| ||||||||| |||||| ||||||||||||| ||||| ||||| |||| |
|
|
| T |
20950245 |
tcaatcttcggttcaatcccattcacaaccttcatcgaacaaaaaacctcacaagcaacttcaatcaaac |
20950314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University