View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11144_low_10 (Length: 422)
Name: NF11144_low_10
Description: NF11144
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11144_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 386; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 1 - 407
Target Start/End: Original strand, 21469260 - 21469668
Alignment:
| Q |
1 |
aagttttcgatggatcttctacaaatgatcaacatgaaagtaatcgttctaacgaagaacaagtcgaagggatgaaacattcatgtccaacatcaagcag |
100 |
Q |
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| T |
21469260 |
aagttttcgatggatcttctacaaatgatcaacatgaaagtaatcgttctaacgaagaacaagtcgaagggatgaaacattcatgtccaacatcaagcag |
21469359 |
T |
|
| Q |
101 |
cagcaacacaaatatgaaattgcattactcttctaatagttctacaacactaaagtaactttgaaatagttaataacagcaatgtgactagggaactaga |
200 |
Q |
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| T |
21469360 |
cagcaacacaaatatgaaattgcattactcttctaatagttctacaacactaaagtaactttgaaatagttaataacagcaatgtgactagggaactaga |
21469459 |
T |
|
| Q |
201 |
atttcttagcatgagtgatttggtttctatttgattttaagtgcttcagcttcattattattgtttgattgtgtataaggatattttagttttaataatt |
300 |
Q |
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| T |
21469460 |
atttcttagcatgagtgatttggtttctatttgattttaagtgcttcagcttcataattatggtttgattgtgtataaggatattttagttttaataatt |
21469559 |
T |
|
| Q |
301 |
gtgagatttgaagtaatctttcttcattactttttcttttcttgcaaactatatcaaggaggatatttaaacctttatgatctcat--tatatatgtaag |
398 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| |
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| T |
21469560 |
gtgagatttgaagtaatctttcttcattactttttcttttcttgcaaactatatcaaggaggatatataaacctttatgatctcattatatatatgtaag |
21469659 |
T |
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| Q |
399 |
agtgcagtt |
407 |
Q |
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| T |
21469660 |
agtgcagtt |
21469668 |
T |
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